View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_low_16 (Length: 554)
Name: NF13295_low_16
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 276 - 540
Target Start/End: Complemental strand, 30384844 - 30384580
Alignment:
| Q |
276 |
agttcactacagagcaaaactagcaacttttatctgcattttaggacccaaaaatcataaacatccaaccacatgaaatgaaaagtggcaaaaacagaca |
375 |
Q |
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| T |
30384844 |
agttcactacagagcaaaactagcaacttttttctgcattttaggacccaaaaatcataaacatccaaccacatgaaatgaaaagtggcaaaaacagaca |
30384745 |
T |
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| Q |
376 |
ttattatgtagaaaagaaggtgaatatgaaactcactagttgaaacttgaatggaagaaggaaagaataataatgagtgaaactcagttgaatatatggc |
475 |
Q |
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| T |
30384744 |
ttattatgtagaaaagaaggtgaatatgaaactcactagttgaaacttgaatggaagaaggaaagaataataatgagtgaaactcagttgaatatatggc |
30384645 |
T |
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| Q |
476 |
ttataaaagctttcaactaccgacagtggctacaactattagctgaggaaaaccgagtgagaagt |
540 |
Q |
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| T |
30384644 |
ttataaaagctttcaactaccgacagtggctacaactattagctgaggaaaaccgagtgagaagt |
30384580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 266
Target Start/End: Complemental strand, 30385125 - 30384871
Alignment:
| Q |
13 |
aaaattgagatcctaataaatactttactataaatgatattctgagtcaatatg-tcaatcttacaacatggtcttaattatttcatttatttggtgcca |
111 |
Q |
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| T |
30385125 |
aaaattgagatcctaataaatacttaactataaattatattctgagtcaatatggtcaatcttacaacatggtcttaattatttcatctatttggtgcca |
30385026 |
T |
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| Q |
112 |
gaaaacatcatacatagcttctactctagtccagaaactgaaacatagcatttccatatttaaatattgattcatagcaacacaagagaaaatccctaaa |
211 |
Q |
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| T |
30385025 |
gaaaacatcatacatagcttctactctagtccagaaactgaaacatagcatttccatatttaaatattgattcatagcaacacaagagaaaatccctaaa |
30384926 |
T |
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| Q |
212 |
acttagatatataaaatacaaaaaatcatttgtcactttttaacacttcctagat |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30384925 |
acttagatatataaaatacaaaaaatcatttgtcactttttaacacttcctagat |
30384871 |
T |
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