View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13295_low_17 (Length: 546)
Name: NF13295_low_17
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 43456287 - 43455754
Alignment:
| Q |
1 |
catagcccgcacttctgatccagtttgcagtgatccaaccatgctgtaattggaattgttccatatcttgacgtatatgtaaaacagtcagttaactatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43456287 |
catagcccgcacttctgatccagtttgcagtgatccaaccatgctgtaattggaattattccatatcttgacgtatatgtaaaacagtcagttaactatg |
43456188 |
T |
|
| Q |
101 |
gtacgaacatccagaaagttaatatcaaagaagctcaaataatttctatgatttagaattcaatatatcatgaaacctgatgtttctagcaagaattaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43456187 |
gtacgaacatccagaaagttaatatcaaagaagctcaaataatttctatgatttagaattcaatatatcatgaaacctgatgtttctagcaagaattaag |
43456088 |
T |
|
| Q |
201 |
tatttatatatacacacaaaccatatatgtgtgagatacctttatagcagttccatccaaggaagagccagctgcatatataagttcaccatgaacttgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43456087 |
tatttatatatacacacaaaccatatatgtgtgagatacctttatagcagttccatccaaggaagagccagctgcatatataagttcaccatgaacttgc |
43455988 |
T |
|
| Q |
301 |
agtgcatgaataggatatgctttcccaagtaatcttttagaaccactttgaatattactgatagttccagtggccaaatgtatctcctgaaatatgacaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43455987 |
agtgcatgaataggatatgctttcccaagtaatcttttagaaccactttgaatattactgatagttccagtggccaaatgtatctcctgaaatatgacaa |
43455888 |
T |
|
| Q |
401 |
tattattatcacaaatatgtcgagataacatcacatactcaagttgagatagcatcacattggatttaggctatgtcgtacttcttaaaacttgatacct |
500 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43455887 |
taatattatcacaaatatgtcgagataacatcacatactcaagttgagatagcatcacattggatttaggctatgtcgtacttcttaaaacttgatacct |
43455788 |
T |
|
| Q |
501 |
gaacactactgtcgtggcatccacagtataatct |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
43455787 |
gaacactactgtcgtggcatccacagtataatct |
43455754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University