View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13295_low_19 (Length: 537)
Name: NF13295_low_19
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 19 - 535
Target Start/End: Original strand, 26832282 - 26832796
Alignment:
| Q |
19 |
catgttactttttatgcacacaaaagaaaccaaccaaaggaagaaaataacactagacttctttggagatcataaaaagaagcatacgtggctaaataag |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
26832282 |
catgttactttttatgcacacaaaagaaaccaaccaaaggaagaaaataacactagacttctttgaagatcataaaa-gaagcatacgtggctaaataag |
26832380 |
T |
|
| Q |
119 |
aaagccattcaagtactaagtgggacttacttcagccacggccaaaatctaacattctcaaaataaacaaaatctaccgacagattgattttattgtttt |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26832381 |
aaagccattcaagtactaagtgggacttacttcagccacggccaaaatctaacattctcaaaataaacaaaatctaccgacagtttgattttattgtttt |
26832480 |
T |
|
| Q |
219 |
gtagctctttatggcacaagttagcatgacccctaaaagataaacaaaagaagttaatgtgattataagaaggagaagaaaaggaaattaccaaacttcc |
318 |
Q |
| |
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| T |
26832481 |
gcggctctttagggcacaagttagcatgaccc-taaaagataaataaaagaagttaatgtgattataagaaggagaagaaaaggaaattaccaaacttcc |
26832579 |
T |
|
| Q |
319 |
agcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagcatcaaagatagc |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832580 |
agcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagcatcaaagatagc |
26832679 |
T |
|
| Q |
419 |
aacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcatactttatattc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832680 |
aacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcatactttatattc |
26832779 |
T |
|
| Q |
519 |
acacctttgctactcca |
535 |
Q |
| |
|
||||||||||| ||||| |
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|
| T |
26832780 |
acacctttgcttctcca |
26832796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 304 - 527
Target Start/End: Original strand, 26785847 - 26786070
Alignment:
| Q |
304 |
aattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatc |
403 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||| | || || ||||||||||| ||||||||||| |
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| T |
26785847 |
aattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaatc |
26785946 |
T |
|
| Q |
404 |
agcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaact |
503 |
Q |
| |
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|||||||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||| |
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| T |
26785947 |
agcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaact |
26786046 |
T |
|
| Q |
504 |
tcatactttatattcacacctttg |
527 |
Q |
| |
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||||||||||| |||||||||||| |
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|
| T |
26786047 |
tcatactttatgttcacacctttg |
26786070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 304 - 527
Target Start/End: Original strand, 26822488 - 26822711
Alignment:
| Q |
304 |
aattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||| | ||||| |||||||| ||||||||||| |
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|
| T |
26822488 |
aattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaagaaaagggatcgttcggcggagaaagtcaggttcaggttgaaaatc |
26822587 |
T |
|
| Q |
404 |
agcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaact |
503 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||| |
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|
| T |
26822588 |
agcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaact |
26822687 |
T |
|
| Q |
504 |
tcatactttatattcacacctttg |
527 |
Q |
| |
|
||||||||||| |||||||||||| |
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|
| T |
26822688 |
tcatactttatgttcacacctttg |
26822711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 307 - 527
Target Start/End: Original strand, 26791590 - 26791810
Alignment:
| Q |
307 |
taccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagc |
406 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
26791590 |
taccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcaggttcaggttgaaaatcagc |
26791689 |
T |
|
| Q |
407 |
atcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttca |
506 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||| |
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|
| T |
26791690 |
atcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttca |
26791789 |
T |
|
| Q |
507 |
tactttatattcacacctttg |
527 |
Q |
| |
|
|||||||| |||||||||||| |
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| T |
26791790 |
tactttatgttcacacctttg |
26791810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 393 - 514
Target Start/End: Complemental strand, 41546352 - 41546231
Alignment:
| Q |
393 |
ggttgaaaatcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctat |
492 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||| |||||||| || || | ||||| ||||||||||||||||||| |
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|
| T |
41546352 |
ggttgaaaatcagcatcaaagatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttctat |
41546253 |
T |
|
| Q |
493 |
tgtccctaacttcatactttat |
514 |
Q |
| |
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| ||||| | ||||||||||| |
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| T |
41546252 |
tttcccttatctcatactttat |
41546231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 298 - 529
Target Start/End: Complemental strand, 41917671 - 41917440
Alignment:
| Q |
298 |
aaaggaaattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttg |
397 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| |||| ||| ||||| |||||||||| || | || || | ||| ||||| | ||||||||| |||||||| |
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|
| T |
41917671 |
aaagaaaattaccaaatttccaacgagcttgaataagcccaatttcaggattatgcaccataaatggtacggtacgccacaaaaaatcaggctctggttg |
41917572 |
T |
|
| Q |
398 |
aaaatcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtcc |
497 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||||| |||||||||||||| |||||||| || ||||| || ||||||||||| ||||||||||||||| |
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|
| T |
41917571 |
aaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatccatttctattgtcc |
41917472 |
T |
|
| Q |
498 |
ctaacttcatactttatattcacacctttgct |
529 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |
|
|
| T |
41917471 |
ctaacttcatactttatattcactcctttgct |
41917440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 481
Target Start/End: Original strand, 20239043 - 20239218
Alignment:
| Q |
306 |
ttaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcag |
405 |
Q |
| |
|
|||||||| |||| ||| | ||||||||| |||| ||||||||| |||||| ||||| |||| || | |||||||||||| || |||||||| |
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|
| T |
20239043 |
ttaccaaatctccaacgaccttgaacaagagcaatttcaggattaccaacaagaaaaggaatggctcttctaagaaaatcaggaggaggactaaaatcag |
20239142 |
T |
|
| Q |
406 |
catcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgta |
481 |
Q |
| |
|
||||||| || ||||||| ||||| || || ||||||||| |||| | ||| || || ||||||||||||||||| |
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|
| T |
20239143 |
catcaaatatgacaacatattcacaatgcttgacatagctacgttttagtccttctttcaatgcacctgctttgta |
20239218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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