View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13295_low_2 (Length: 774)

Name: NF13295_low_2
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13295_low_2
NF13295_low_2
[»] chr7 (10 HSPs)
chr7 (238-349)||(27324511-27324622)
chr7 (160-215)||(9942602-9942657)
chr7 (159-216)||(28782014-28782071)
chr7 (19-54)||(9942772-9942807)
chr7 (161-216)||(9948976-9949031)
chr7 (24-58)||(40871480-40871514)
chr7 (26-86)||(1032126-1032195)
chr7 (159-216)||(11621408-11621465)
chr7 (159-216)||(40871301-40871358)
chr7 (57-86)||(9948872-9948901)
[»] chr6 (7 HSPs)
chr6 (238-349)||(3500745-3500856)
chr6 (160-216)||(12912247-12912303)
chr6 (24-58)||(12912426-12912460)
chr6 (24-58)||(18972786-18972820)
chr6 (24-59)||(6029220-6029255)
chr6 (160-214)||(165556-165610)
chr6 (24-58)||(24393804-24393838)
[»] chr4 (15 HSPs)
chr4 (238-349)||(28359306-28359417)
chr4 (19-86)||(43499192-43499268)
chr4 (19-58)||(7743467-7743506)
chr4 (19-85)||(36651871-36651946)
chr4 (19-84)||(42718465-42718539)
chr4 (159-212)||(37870649-37870702)
chr4 (159-215)||(43499341-43499397)
chr4 (27-86)||(9896635-9896703)
chr4 (159-214)||(36651742-36651797)
chr4 (27-58)||(39059887-39059918)
chr4 (24-59)||(47590630-47590665)
chr4 (28-58)||(37870824-37870854)
chr4 (297-339)||(50344859-50344901)
chr4 (159-212)||(7743616-7743669)
chr4 (26-59)||(48640626-48640659)
[»] chr1 (17 HSPs)
chr1 (159-216)||(4532086-4532143)
chr1 (159-215)||(33766400-33766456)
chr1 (19-85)||(4532217-4532292)
chr1 (159-216)||(34549407-34549464)
chr1 (159-216)||(45432373-45432430)
chr1 (159-215)||(51534478-51534534)
chr1 (24-58)||(19228065-19228099)
chr1 (24-58)||(34549251-34549285)
chr1 (159-216)||(19227886-19227943)
chr1 (19-83)||(51534610-51534683)
chr1 (159-207)||(33936477-33936525)
chr1 (24-59)||(20505535-20505570)
chr1 (24-59)||(26676789-26676824)
chr1 (24-59)||(28756653-28756688)
chr1 (24-59)||(33676671-33676706)
chr1 (24-58)||(52022659-52022693)
chr1 (25-58)||(27007563-27007596)
[»] scaffold0300 (2 HSPs)
scaffold0300 (19-86)||(9472-9548)
scaffold0300 (160-216)||(9622-9678)
[»] chr5 (6 HSPs)
chr5 (19-86)||(22639454-22639530)
chr5 (159-216)||(22639603-22639660)
chr5 (19-58)||(19021285-19021324)
chr5 (26-58)||(6536979-6537011)
chr5 (159-215)||(39143220-39143276)
chr5 (291-342)||(27771336-27771387)
[»] chr2 (13 HSPs)
chr2 (19-85)||(12410682-12410757)
chr2 (19-85)||(12422742-12422817)
chr2 (19-85)||(37647860-37647935)
chr2 (19-58)||(6764315-6764354)
chr2 (159-207)||(37648009-37648057)
chr2 (159-215)||(2702258-2702314)
chr2 (160-216)||(12410832-12410888)
chr2 (160-216)||(12422892-12422948)
chr2 (24-59)||(3044230-3044265)
chr2 (290-349)||(5609207-5609266)
chr2 (19-58)||(27271534-27271573)
chr2 (160-215)||(27271685-27271740)
chr2 (24-58)||(11031678-11031712)
[»] chr8 (11 HSPs)
chr8 (19-86)||(24503949-24504025)
chr8 (163-216)||(13089765-13089818)
chr8 (159-215)||(45547944-45548000)
chr8 (24-58)||(4034467-4034501)
chr8 (21-86)||(8444389-8444463)
chr8 (26-58)||(45540217-45540249)
chr8 (24-59)||(9932271-9932306)
chr8 (28-59)||(10230280-10230311)
chr8 (24-59)||(25582756-25582791)
chr8 (24-58)||(13089953-13089987)
chr8 (159-216)||(4034300-4034357)
[»] scaffold0041 (2 HSPs)
scaffold0041 (24-58)||(94768-94802)
scaffold0041 (159-216)||(94924-94981)
[»] scaffold0037 (2 HSPs)
scaffold0037 (24-58)||(865-899)
scaffold0037 (160-207)||(1022-1069)
[»] chr3 (2 HSPs)
chr3 (24-59)||(10436606-10436641)
chr3 (24-59)||(20406269-20406304)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 3e-44; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 238 - 349
Target Start/End: Original strand, 27324511 - 27324622
Alignment:
Q  238 ctaacgtgaattaaaatcacgtatcattcataagagtgggatggaaatgagtaatgataattttggtattatgaataaattttaattaaatttggatgta 337  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||    
T  27324511 ctaacgtgaattaaaatcacgtaccattcataagagtgggaaggaaatgagtaaggataattttggtattatgaataaattttaattgaatttgggtgta 27324610  T
Q  338 acttgatatttt 349  Q
    ||||||||||||    
T  27324611 acttgatatttt 27324622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 9942657 - 9942602
Alignment:
Q  160 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 215  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||    
T  9942657 cactccttgtgctgaaatctccagactttcagtattttaatccattttagtttctt 9942602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 28782071 - 28782014
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 216  Q
    ||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||    
T  28782071 gcactccttgtgctgaaatctccaggctttcagtattttaatccattttagtttcttc 28782014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 9942807 - 9942772
Alignment:
Q  19 accgacctagttttgttttctcctaccattcatggt 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  9942807 accgacctagttttgttttctcctaccattcatggt 9942772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 9948976 - 9949031
Alignment:
Q  161 actccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 216  Q
    ||||||||||||||||||| ||| |||| |||||| ||||||||||| ||||||||    
T  9948976 actccttgtgctgaaatcttcaggctttcagtattttaatccattttagtttcttc 9949031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 40871514 - 40871480
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtt 58  Q
    |||||||||||||||||||||||||||||||||||    
T  40871514 cctagttttgttttctcctaccattcatggtggtt 40871480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 1032126 - 1032195
Alignment:
Q  26 tagttttgttttctcctaccattcatggtggtt---------accttgcttaggaatatttatgtaacag 86  Q
    ||||||||||||||||||| |||||||||||||         ||||||||||||||||||||||||||||    
T  1032126 tagttttgttttctcctactattcatggtggttgaaccatttaccttgcttaggaatatttatgtaacag 1032195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 11621408 - 11621465
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 216  Q
    ||||||||||||||||||||||||| |||| |||| | ||||||||||| | ||||||    
T  11621408 gcactccttgtgctgaaatctccaggctttcagtaatataatccattttagcttcttc 11621465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 40871358 - 40871301
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 216  Q
    ||||||||||||||||||||||||| |||||| || | ||||||||||| | ||||||    
T  40871358 gcactccttgtgctgaaatctccaggcttttaataatataatccattttagcttcttc 40871301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 9948872 - 9948901
Alignment:
Q  57 ttaccttgcttaggaatatttatgtaacag 86  Q
    ||||||||||||||||||||||||||||||    
T  9948872 ttaccttgcttaggaatatttatgtaacag 9948901  T

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Target: chr6 (Bit Score: 88; Significance: 7e-42; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 238 - 349
Target Start/End: Original strand, 3500745 - 3500856
Alignment:
Q  238 ctaacgtgaattaaaatcacgtatcattcataagagtgggatggaaatgagtaatgataattttggtattatgaataaattttaattaaatttggatgta 337  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| ||||||| ||||    
T  3500745 ctaacgtgaattaaaatcatgtatcattcataagagtgggaaggaaatgagtaaggataattttgttattatgaataaattttaattgaatttgggtgta 3500844  T
Q  338 acttgatatttt 349  Q
    ||||||||||||    
T  3500845 acttgatatttt 3500856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 12912303 - 12912247
Alignment:
Q  160 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 216  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||| | ||||||    
T  12912303 cactccttgtgctgaaatctccagacttttagtaatataatccattttagcttcttc 12912247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 12912460 - 12912426
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtt 58  Q
    |||||||||||||||||||||||||||||||||||    
T  12912460 cctagttttgttttctcctaccattcatggtggtt 12912426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 18972820 - 18972786
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtt 58  Q
    |||||||||||||||||||||||||||||||||||    
T  18972820 cctagttttgttttctcctaccattcatggtggtt 18972786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 6029220 - 6029255
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtta 59  Q
    |||||||||||||||||||||||| |||||||||||    
T  6029220 cctagttttgttttctcctaccatacatggtggtta 6029255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 165556 - 165610
Alignment:
Q  160 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttct 214  Q
    |||| |||||||||||||||| ||||||||| || | ||||||||||| ||||||    
T  165556 cacttcttgtgctgaaatctcaagacttttaataatataatccattttagtttct 165610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 24393804 - 24393838
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtt 58  Q
    |||||||||||||||||||||||||| ||||||||    
T  24393804 cctagttttgttttctcctaccattcgtggtggtt 24393838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 7e-42; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 238 - 349
Target Start/End: Original strand, 28359306 - 28359417
Alignment:
Q  238 ctaacgtgaattaaaatcacgtatcattcataagagtgggatggaaatgagtaatgataattttggtattatgaataaattttaattaaatttggatgta 337  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| | ||||||| ||||    
T  28359306 ctaacgtgaattaaaatcacgtatcattcataagagtgggaaggaaatgagtaaggataattttgatattatgaataaattttaaatgaatttgggtgta 28359405  T
Q  338 acttgatatttt 349  Q
    ||||||||||||    
T  28359406 acttgatatttt 28359417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 43499192 - 43499268
Alignment:
Q  19 accgacctagttttgttttctcctaccattcatggtgg---------ttaccttgcttaggaatatttatgtaacag 86  Q
    ||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  43499192 accgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttaggaatatttatgtaacag 43499268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 7743467 - 7743506
Alignment:
Q  19 accgacctagttttgttttctcctaccattcatggtggtt 58  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7743467 accgacctagttttgttttctcctaccattcatggtggtt 7743506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 36651946 - 36651871
Alignment:
Q  19 accgacctagttttgttttctcctaccattcatggtgg---------ttaccttgcttaggaatatttatgtaaca 85  Q
    |||||| |||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  36651946 accgacttagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttaggaatatttatgtaaca 36651871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 42718465 - 42718539
Alignment:
Q  19 accgacctagttttgttttctcctaccattcatggtgg---------ttaccttgcttaggaatatttatgtaac 84  Q
    ||||||||| ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  42718465 accgacctaattttgttttctcctaccattcatggtggttgaaccctttaccttgcttaggaatatttatgtaac 42718539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 37870702 - 37870649
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgttt 212  Q
    |||||||||||||||||||||||||||||| |||| | ||||||||||| ||||    
T  37870702 gcactccttgtgctgaaatctccagactttgagtaatataatccattttagttt 37870649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 43499341 - 43499397
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 215  Q
    ||||||||||||||||||||||||  |||| |||||| ||||||||||| |||||||    
T  43499341 gcactccttgtgctgaaatctccaagctttcagtattttaatccattttagtttctt 43499397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 9896703 - 9896635
Alignment:
Q  27 agttttgttttctcctaccattcatggtgg---------ttaccttgcttaggaatatttatgtaacag 86  Q
    ||||||||||||||||||||||||||||||         ||||||||||| ||||||||||||||||||    
T  9896703 agttttgttttctcctaccattcatggtggttgaaccctttaccttgcttgggaatatttatgtaacag 9896635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 36651797 - 36651742
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttct 214  Q
    |||||||||||||||||||||||| |||||   |||| ||||||||||| ||||||    
T  36651797 gcactccttgtgctgaaatctccaaactttcgatattttaatccattttagtttct 36651742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 58
Target Start/End: Complemental strand, 39059918 - 39059887
Alignment:
Q  27 agttttgttttctcctaccattcatggtggtt 58  Q
    ||||||||||||||||||||||||||||||||    
T  39059918 agttttgttttctcctaccattcatggtggtt 39059887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 47590665 - 47590630
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtta 59  Q
    |||||||||||||||||||||||||| |||||||||    
T  47590665 cctagttttgttttctcctaccattcttggtggtta 47590630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 58
Target Start/End: Complemental strand, 37870854 - 37870824
Alignment:
Q  28 gttttgttttctcctaccattcatggtggtt 58  Q
    |||||||||||||||||||||||||||||||    
T  37870854 gttttgttttctcctaccattcatggtggtt 37870824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 50344859 - 50344901
Alignment:
Q  297 attttggtattatgaataaattttaattaaatttggatgtaac 339  Q
    |||||||||||||| || ||||||||||||| |||||||||||    
T  50344859 attttggtattatggattaattttaattaaaattggatgtaac 50344901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 7743616 - 7743669
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgttt 212  Q
    ||||||||||||||||||||||||  |||| ||| || ||||||||||| ||||    
T  7743616 gcactccttgtgctgaaatctccatgctttcagttttttaatccattttagttt 7743669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 48640626 - 48640659
Alignment:
Q  26 tagttttgttttctcctaccattcatggtggtta 59  Q
    |||||||||||||||||||||||| |||||||||    
T  48640626 tagttttgttttctcctaccattcttggtggtta 48640659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 4532143 - 4532086
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 216  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||    
T  4532143 gcactccttgtgctgaaatctccagactttcagtattttaatccattttagtttcttc 4532086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 33766400 - 33766456
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 215  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||    
T  33766400 gcactccttgtgctgaaatctccagactttcagtattttaatccattttagtttctt 33766456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 4532292 - 4532217
Alignment:
Q  19 accgacctagttttgttttctcctaccattcatggtggtt---------accttgcttaggaatatttatgtaaca 85  Q
    ||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||    
T  4532292 accgacctagttttgttttctcctaccattcatggtggttgaacccttcaccttgcttaggaatatttatgtaaca 4532217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 34549407 - 34549464
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 216  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||| | ||||||    
T  34549407 gcactccttgtgctgaaatctccagacttttagtaatataatccattttagcttcttc 34549464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 45432430 - 45432373
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 216  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||| | ||||||    
T  45432430 gcactccttgtgctgaaatctccagacttttagtaatataatccattttagcttcttc 45432373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 51534534 - 51534478
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 215  Q
    ||||||||||||||||||||||||| ||||  ||||| ||||||||||| |||||||    
T  51534534 gcactccttgtgctgaaatctccaggctttcggtattttaatccattttagtttctt 51534478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 19228099 - 19228065
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtt 58  Q
    |||||||||||||||||||||||||||||||||||    
T  19228099 cctagttttgttttctcctaccattcatggtggtt 19228065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 34549251 - 34549285
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtt 58  Q
    |||||||||||||||||||||||||||||||||||    
T  34549251 cctagttttgttttctcctaccattcatggtggtt 34549285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 19227943 - 19227886
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 216  Q
    ||||||||||||||||||||||||| |||| |||| | ||||||||||| | ||||||    
T  19227943 gcactccttgtgctgaaatctccaggctttcagtaatataatccattttagcttcttc 19227886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 51534683 - 51534610
Alignment:
Q  19 accgacctagttttgttttctcctaccattcatggtg---------gttaccttgcttaggaatatttatgtaa 83  Q
    ||||||||||||||| |||||||||||||||||||||          |||||||||||||||||||||||||||    
T  51534683 accgacctagttttggtttctcctaccattcatggtgattgaaccctttaccttgcttaggaatatttatgtaa 51534610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 33936477 - 33936525
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttt 207  Q
    ||||||||||| |||||||||||||||||| |||| | |||||||||||    
T  33936477 gcactccttgtcctgaaatctccagactttcagtaatataatccatttt 33936525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 20505535 - 20505570
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtta 59  Q
    |||||||||||||||||||||||||| |||||||||    
T  20505535 cctagttttgttttctcctaccattcttggtggtta 20505570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 26676789 - 26676824
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtta 59  Q
    |||||||||||||||||||||||||| |||||||||    
T  26676789 cctagttttgttttctcctaccattcttggtggtta 26676824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 28756688 - 28756653
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtta 59  Q
    |||||||||||||||||||||||||| |||||||||    
T  28756688 cctagttttgttttctcctaccattcttggtggtta 28756653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 33676706 - 33676671
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtta 59  Q
    |||||||||||||||||||||||||| |||||||||    
T  33676706 cctagttttgttttctcctaccattcttggtggtta 33676671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 52022659 - 52022693
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtt 58  Q
    |||||||||||||||||||| ||||||||||||||    
T  52022659 cctagttttgttttctcctatcattcatggtggtt 52022693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 27007596 - 27007563
Alignment:
Q  25 ctagttttgttttctcctaccattcatggtggtt 58  Q
    ||||||||||||||||||||||||| ||||||||    
T  27007596 ctagttttgttttctcctaccattcgtggtggtt 27007563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 9472 - 9548
Alignment:
Q  19 accgacctagttttgttttctcctaccattcatggtgg---------ttaccttgcttaggaatatttatgtaacag 86  Q
    ||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  9472 accgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttaggaatatttatgtaacag 9548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 9622 - 9678
Alignment:
Q  160 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 216  Q
    |||| ||||||||||||||| ||| ||||||||||| ||||||||||| ||||||||    
T  9622 cacttcttgtgctgaaatcttcaggcttttagtattttaatccattttagtttcttc 9678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 22639454 - 22639530
Alignment:
Q  19 accgacctagttttgttttctcctaccattcatggtgg---------ttaccttgcttaggaatatttatgtaacag 86  Q
    ||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  22639454 accgacctagttttgttttctcctaccattcatggtggttgaaccatttaccttgcttaggaatatttatgtaacag 22639530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 22639603 - 22639660
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 216  Q
    |||||||||||| ||||||||||| ||||| |||||| ||||||||||| ||||||||    
T  22639603 gcactccttgtgatgaaatctccaaactttcagtattttaatccattttagtttcttc 22639660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 19021285 - 19021324
Alignment:
Q  19 accgacctagttttgttttctcctaccattcatggtggtt 58  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  19021285 accgacctagttttgttttctcctgccattcatggtggtt 19021324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 6536979 - 6537011
Alignment:
Q  26 tagttttgttttctcctaccattcatggtggtt 58  Q
    |||||||||||||||||||||||||||||||||    
T  6536979 tagttttgttttctcctaccattcatggtggtt 6537011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 39143276 - 39143220
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 215  Q
    ||||||||| ||||||||||||||| ||||  ||||| ||||||||||| |||||||    
T  39143276 gcactccttatgctgaaatctccaggctttcggtattttaatccattttagtttctt 39143220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 27771336 - 27771387
Alignment:
Q  291 atgataattttggtattatgaataaattttaattaaatttggatgtaacttg 342  Q
    |||| ||||||||||||||   |||||||||| |||||||||||||||||||    
T  27771336 atgacaattttggtattattgttaaattttaaataaatttggatgtaacttg 27771387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 12410682 - 12410757
Alignment:
Q  19 accgacctagttttgttttctcctaccattcatggtgg---------ttaccttgcttaggaatatttatgtaaca 85  Q
    ||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  12410682 accgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttaggaatatttatgtaaca 12410757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 12422742 - 12422817
Alignment:
Q  19 accgacctagttttgttttctcctaccattcatggtgg---------ttaccttgcttaggaatatttatgtaaca 85  Q
    ||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  12422742 accgacctagttttgttttctcctaccattcatggtggttgaaccctttaccttgcttaggaatatttatgtaaca 12422817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 37647860 - 37647935
Alignment:
Q  19 accgacctagttttgttttctcctaccattcatggtgg---------ttaccttgcttaggaatatttatgtaaca 85  Q
    ||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  37647860 accgacctagttttgttttctcctaccattcatggtggttggaccctttaccttgcttaggaatatttatgtaaca 37647935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 6764315 - 6764354
Alignment:
Q  19 accgacctagttttgttttctcctaccattcatggtggtt 58  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6764315 accgacctagttttgttttctcctaccattcatggtggtt 6764354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 37648009 - 37648057
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttt 207  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||||||    
T  37648009 gcactccttgtgctgaaatctccaaactttcagtattttaatccatttt 37648057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 2702314 - 2702258
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 215  Q
    |||||||||||||||||||||  || |||| |||||| ||||||||||| |||||||    
T  2702314 gcactccttgtgctgaaatcttgaggctttcagtattttaatccattttagtttctt 2702258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 12410832 - 12410888
Alignment:
Q  160 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 216  Q
    ||||| ||||| |||||||||||| |||| |||||| ||||||||||| ||||||||    
T  12410832 cactctttgtgatgaaatctccaggctttcagtattttaatccattttagtttcttc 12410888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 12422892 - 12422948
Alignment:
Q  160 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 216  Q
    ||||| ||||| |||||||||||| |||| |||||| ||||||||||| ||||||||    
T  12422892 cactctttgtgatgaaatctccaggctttcagtattttaatccattttagtttcttc 12422948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 3044230 - 3044265
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtta 59  Q
    |||||||||||||||||||||||||| |||||||||    
T  3044230 cctagttttgttttctcctaccattcttggtggtta 3044265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 5609207 - 5609266
Alignment:
Q  290 aatgataattttggtattatgaataaattttaattaaatttggatgtaacttgatatttt 349  Q
    ||||| |||||  ||||||| |||||||||||||||| ||||||||||||  ||||||||    
T  5609207 aatgacaatttcagtattattaataaattttaattaactttggatgtaacaagatatttt 5609266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 27271534 - 27271573
Alignment:
Q  19 accgacctagttttgttttctcctaccattcatggtggtt 58  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  27271534 accgtcctagttttgttttctcctacctttcatggtggtt 27271573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 27271685 - 27271740
Alignment:
Q  160 cactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 215  Q
    |||||||||||||||||||||||| |||| |||| | ||||| ||||| |||||||    
T  27271685 cactccttgtgctgaaatctccaggctttcagtaatttaatctattttagtttctt 27271740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 11031678 - 11031712
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtt 58  Q
    |||| ||||||||||||||||||||||||||||||    
T  11031678 cctaattttgttttctcctaccattcatggtggtt 11031712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 24503949 - 24504025
Alignment:
Q  19 accgacctagttttgttttctcctaccattcatggtgg---------ttaccttgcttaggaatatttatgtaacag 86  Q
    ||||||||||||||||||||||||||||||||||||||         |||||||| |||||||||||||||||||||    
T  24503949 accgacctagttttgttttctcctaccattcatggtggctgaaccctttaccttgtttaggaatatttatgtaacag 24504025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 13089818 - 13089765
Alignment:
Q  163 tccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 216  Q
    ||||||||||||||||||||||||||||||| | ||||||||||| | ||||||    
T  13089818 tccttgtgctgaaatctccagacttttagtaatataatccattttagcttcttc 13089765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 45547944 - 45548000
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttctt 215  Q
    ||||||||||||||||||||||||| |||| |||| | ||||||||||| |||||||    
T  45547944 gcactccttgtgctgaaatctccaggctttcagtaatttaatccattttagtttctt 45548000  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 4034501 - 4034467
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtt 58  Q
    |||||||||||||||||||||||||||||||||||    
T  4034501 cctagttttgttttctcctaccattcatggtggtt 4034467  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 8444463 - 8444389
Alignment:
Q  21 cgacctagttttgttttctcctaccattcatggtggtt---------accttgcttaggaatatttatgtaacag 86  Q
    |||||||||||||||||||| ||||||||||||| |||         ||||||||||||||||||||||||||||    
T  8444463 cgacctagttttgttttctcttaccattcatggttgttgaactctttaccttgcttaggaatatttatgtaacag 8444389  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 45540217 - 45540249
Alignment:
Q  26 tagttttgttttctcctaccattcatggtggtt 58  Q
    |||||||||||||||||||||||||||||||||    
T  45540217 tagttttgttttctcctaccattcatggtggtt 45540249  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 9932306 - 9932271
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtta 59  Q
    |||||||||||||||||||||||||| |||||||||    
T  9932306 cctagttttgttttctcctaccattcttggtggtta 9932271  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 10230311 - 10230280
Alignment:
Q  28 gttttgttttctcctaccattcatggtggtta 59  Q
    ||||||||||||||||||||||||||||||||    
T  10230311 gttttgttttctcctaccattcatggtggtta 10230280  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 25582791 - 25582756
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtta 59  Q
    |||||||||||||||||||||||||| |||||||||    
T  25582791 cctagttttgttttctcctaccattcttggtggtta 25582756  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 13089987 - 13089953
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtt 58  Q
    ||||||||||||||||||||||||| |||||||||    
T  13089987 cctagttttgttttctcctaccatttatggtggtt 13089953  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 4034357 - 4034300
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 216  Q
    |||||||||||||| |||||| ||||||||||||| | |||| |||||| | ||||||    
T  4034357 gcactccttgtgctaaaatcttcagacttttagtaatataattcattttagcttcttc 4034300  T

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Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 94768 - 94802
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtt 58  Q
    |||||||||||||||||||||||||||||||||||    
T  94768 cctagttttgttttctcctaccattcatggtggtt 94802  T

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Target: scaffold0041; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 94924 - 94981
Alignment:
Q  159 gcactccttgtgctgaaatctccagacttttagtattgtaatccatttttgtttcttc 216  Q
    ||||||||||||||||||||||||| |||||| || | ||||||||||| | ||||||    
T  94924 gcactccttgtgctgaaatctccaggcttttaataatataatccattttagcttcttc 94981  T

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Target: scaffold0037 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 865 - 899
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtt 58  Q
    |||||||||||||||||||||||||||||||||||    
T  865 cctagttttgttttctcctaccattcatggtggtt 899  T

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Target: scaffold0037; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 1022 - 1069
Alignment:
Q  160 cactccttgtgctgaaatctccagacttttagtattgtaatccatttt 207  Q
    |||||||| ||||||||||||||||||||| ||| | |||||||||||    
T  1022 cactccttatgctgaaatctccagactttttgtaatataatccatttt 1069  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 10436641 - 10436606
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtta 59  Q
    |||||||||||||||||||||||||| |||||||||    
T  10436641 cctagttttgttttctcctaccattcttggtggtta 10436606  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 20406269 - 20406304
Alignment:
Q  24 cctagttttgttttctcctaccattcatggtggtta 59  Q
    |||||||||||||||||||||||||| |||||||||    
T  20406269 cctagttttgttttctcctaccattcttggtggtta 20406304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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