View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_low_22 (Length: 469)
Name: NF13295_low_22
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 76 - 459
Target Start/End: Original strand, 1766031 - 1766414
Alignment:
| Q |
76 |
aaatttttgaagctattttaccaaaattgtttgttttgttaaatatattttataaaaattgttaattgtaaacaattaagtgtttaaagagtaactcaat |
175 |
Q |
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| T |
1766031 |
aaatgtttgaagctattttaccaaaattgtttgttttgttaaatatattttataaaaattgttaattgtaaacaattaagtgtttaaagagtaactcaat |
1766130 |
T |
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| Q |
176 |
tcattttgttaattagtggcagttagaggtagttataattttcaaattttttagctagaattgttactttgtcattaccatcagaagtattattatttat |
275 |
Q |
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| T |
1766131 |
tcattttgttaattagtggcagttagatgtagttataattttcaaattttttaactagaattgttactttgtcattaccatcagaagtattattatttat |
1766230 |
T |
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| Q |
276 |
attaaacaaagaggtgcaaagatatcattatgcttgtataacatctaaacaatgttggcatccccacacaaacaaaaatcatctacaacacacaaattag |
375 |
Q |
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| T |
1766231 |
attaaacaaagaggtgcaaagatatcattatgcttgtataacatctaaactatgttggcatccccatacaaacaaaaatcatctacaacacacaaattag |
1766330 |
T |
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| Q |
376 |
cactaaaataaatacaggcgtttgatatattttaaagaccatcaataaacaattcaataatacaaacctaattccgatttcatt |
459 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1766331 |
cactaaaataaatacaggtgtttgatatattttaaagaccatcaataaacaattcaataatacaaacctcattccgatttcatt |
1766414 |
T |
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