View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13295_low_23 (Length: 456)
Name: NF13295_low_23
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_23 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 3 - 456
Target Start/End: Complemental strand, 36234150 - 36233693
Alignment:
| Q |
3 |
ggtagataatactaagagtccttttcagcttgcttgaattacaatttctaagcaatttcatgtttatgaatgatcatgttgtgtctcaacatttaatgac |
102 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36234150 |
ggtatataatactaagagtccttttcagcttgcttgaattacaatttctaagcaatttcatgtttatgaatgatcatgttgtgtctcaacatttaatgac |
36234051 |
T |
|
| Q |
103 |
ttttaannnnnnnaagtattattggtgtctacatattactgtttcgttaacaacggcgtggtgtaattggatggagcataatgatgttgtctttaaaagt |
202 |
Q |
| |
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|||||| ||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36234050 |
ttttaatttttttaagtattatcggtgtctacatattactgcttcgttaacaacggcatggtgtaattggatggagcataatgatgttgtctttaaaagt |
36233951 |
T |
|
| Q |
203 |
aaagttgcaaattctttagaagtggtcaatcttataa-----gtatcgtgatcttagttcatatgtggggaggggcataataaaaaatttgttttctcgg |
297 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36233950 |
aaagttgcaaattctttagaagtggtcaatctcgtaaagcgtctatcgtgatcttagttcatatgtagggaggggcataataaaaaatttgttttctcgg |
36233851 |
T |
|
| Q |
298 |
attagtggtcgaaccccattgtatatcttcaaaacatgcaatttcttgacttattgtaatcgacttggagtaccccttgtattcaatttaataaaatctt |
397 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
36233850 |
attagtggttgaaccccattgtatatcttcaaaacatgtaatttcttgacttattgtaatggacttggagta-cccttgtattcaatttaataaaatctt |
36233752 |
T |
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| Q |
398 |
gcttttnnnnnnnncatattactgcttcataggcctacatgttattactagatgcatat |
456 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36233751 |
gcttttaaaaaaaacatattactgcttcataggcctacatgttattactagatgcatat |
36233693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 148 - 373
Target Start/End: Original strand, 8541 - 8754
Alignment:
| Q |
148 |
gttaacaacggcgtggtgtaattggatggagcataatgatgttgtctttaaaagtaaagttgcaaattctttagaagtggtcaatcttataagtatcgtg |
247 |
Q |
| |
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||||||||||| |||||||| ||||||||| |||||||||||| || ||||| | |||||||||||| |||| || |||||| ||||||| |
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| T |
8541 |
gttaacaacggggtggtgtatttggatggaacataatgatgttctcattaaaggcaaagttgcaaatgctttggaggtggtc-----------tatcgtg |
8629 |
T |
|
| Q |
248 |
atcttagttcatatgtggggaggggcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaacatgcaatttcttgac |
347 |
Q |
| |
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|| || |||||||| ||||||||||| ||||||| ||| |||||| ||||| ||| | |||||||||||||| ||||||||||||| |||| ||||| |
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| T |
8630 |
attttggttcatatatggggaggggcgtaataaatttttt-ttttcttggattggtgcttgaaccccattgtatgtcttcaaaacatgttattttttgac |
8728 |
T |
|
| Q |
348 |
ttattgtaatcgacttggagtacccc |
373 |
Q |
| |
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||||| |||| | ||| ||||||||| |
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| T |
8729 |
ttattataatgggctttgagtacccc |
8754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 148 - 401
Target Start/End: Original strand, 19596504 - 19596764
Alignment:
| Q |
148 |
gttaacaacggcgtggtgtaattggatggagcataatgatgttgtctttaaaagt-aaagttgcaaattctttagaagtggtcaatcttat-aag----t |
241 |
Q |
| |
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|||||||||| ||||||||| |||||||||| ||||||| || |||| ||||| |||||| ||||| |||| |||||||| ||| || ||| | |
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| T |
19596504 |
gttaacaacgacgtggtgtatttggatggagtgtaatgatattctcttcaaaaggcaaagtttcaaatgctttggaagtggtagatcacattaagcgtct |
19596603 |
T |
|
| Q |
242 |
atcgtgatcttagttcatatgtggggaggggcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaacatgcaattt |
341 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| |||||||| |||||||||| ||||| || || ||||||||||| || | |||||| |||| ||||| |
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| T |
19596604 |
atcgtgatcttggttcatttgtggggaggggcgtaataaaacttttgttttcttggattggttgttgaaccccattgcatgtattcaaagcatgtaattt |
19596703 |
T |
|
| Q |
342 |
cttgactt-attgtaatcgacttggagtaccccttgtattcaatttaataaaatcttgctt |
401 |
Q |
| |
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| |||||| ||||||| | ||| ||||||||| |||| | |||||||||||||||||| |
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|
| T |
19596704 |
cctgacttctttgtaatgggcttcgagtaccccatgtacacgttttaataaaatcttgctt |
19596764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 401
Target Start/End: Complemental strand, 19754830 - 19754570
Alignment:
| Q |
148 |
gttaacaacggcgtggtgtaattggatggagcataatgatgttgtctttaaaagt-aaagttgcaaattctttagaagtggtcaatcttataag-----t |
241 |
Q |
| |
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|||||||||| ||||||||| |||||| |||| ||||||| || |||| ||||| |||||| ||||| |||| |||||||| ||| |||| | |
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| T |
19754830 |
gttaacaacgacgtggtgtatttggattgagcgtaatgatattctcttcaaaaggcaaagtttcaaatgctttggaagtggtagatcacataaagcgtct |
19754731 |
T |
|
| Q |
242 |
atcgtgatcttagttcatatgtggggaggggcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaacatgcaattt |
341 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| |||||||| |||||||||| ||||| ||||| ||||| |||| || | |||||| ||| ||||| |
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| T |
19754730 |
atcgtgatcttggttcatttgtggggaggggcgtaataaaacttttgttttcttggattggtggttgaaccaaattgcatgtattcaaagcatataattt |
19754631 |
T |
|
| Q |
342 |
cttgactt-attgtaatcgacttggagtaccccttgtattcaatttaataaaatcttgctt |
401 |
Q |
| |
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| |||||| ||||||| | ||| ||||||||| |||| | |||||||||||||||||| |
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| T |
19754630 |
cctgacttctttgtaatgggctttgagtaccccatgtacacgttttaataaaatcttgctt |
19754570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 254 - 371
Target Start/End: Complemental strand, 30219319 - 30219203
Alignment:
| Q |
254 |
gttcatatgtggggaggggcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaacatgcaatttcttgacttattg |
353 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||| |||| ||||| ||||| ||| ||| ||||||||||||| ||||||||||||||||| |
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|
| T |
30219319 |
gttcatat-tggggaggggcataataaaaaatttgtttcctcagattggtggttaaaccctattatatgtcttcaaaacatgtaatttcttgacttattg |
30219221 |
T |
|
| Q |
354 |
taatcgacttggagtacc |
371 |
Q |
| |
|
|||| | ||| ||||||| |
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| T |
30219220 |
taatgggcttcgagtacc |
30219203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 401
Target Start/End: Original strand, 39286500 - 39286738
Alignment:
| Q |
163 |
gtgtaattggatggagcataatgatgttgtctttaaaagtaaagttgcaaattctttagaagtggtcaatcttataag-----tatcgtgatcttagttc |
257 |
Q |
| |
|
||||| || |||||||| |||||||||| |||||||| ||||||||||||| ||| || ||||| ||| |||| |||||||||||| |||| |
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|
| T |
39286500 |
gtgtattttgatggagcgtaatgatgttctctttaaagataaagttgcaaatgatttggaggtggttgatcacataaagcgtctatcgtgatcttggttc |
39286599 |
T |
|
| Q |
258 |
atatgtggggaggggcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaacatgcaatttcttgacttattgtaat |
357 |
Q |
| |
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| ||||| |||| | |||| ||||||||||| ||| ||| ||||| |||||||||||||| |||| | ||||| ||||| ||||||||||||||| |
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| T |
39286600 |
aaatgtg---agggacgtaatgaaaaatttgtt--ctcagatcggtggttgaaccccattgtatgtctttcacacatgtaatttattgacttattgtaat |
39286694 |
T |
|
| Q |
358 |
cgacttggagtaccccttgtattcaatttaataaaatcttgctt |
401 |
Q |
| |
|
| | ||||||| |||||| || |||||| |||||||||||| |
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|
| T |
39286695 |
gaccatcgagtacctcttgtactcgatttaacaaaatcttgctt |
39286738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 27479387 - 27479437
Alignment:
| Q |
148 |
gttaacaacggcgtggtgtaattggatggagcataatgatgttgtctttaa |
198 |
Q |
| |
|
|||||||||||||||||||| || |||||||| |||||||||| ||||||| |
|
|
| T |
27479387 |
gttaacaacggcgtggtgtatttagatggagcgtaatgatgttctctttaa |
27479437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 27479500 - 27479599
Alignment:
| Q |
254 |
gttcatatgtggggaggggcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaacatgcaatttcttgacttattg |
353 |
Q |
| |
|
||||||||||||| | |||| |||||||||| |||||||| | ||| ||||| ||||| |||||||| |||| |||||| | || ||||| ||||||| |
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|
| T |
27479500 |
gttcatatgtgggtaagggcgtaataaaaaa--tgttttcttgaattggtggttgaacctcattgtatgtctttaaaacacgtaacttctttgcttattg |
27479597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 354
Target Start/End: Complemental strand, 29871859 - 29871754
Alignment:
| Q |
249 |
tcttagttcatatgtggggaggggcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaacatgcaatttcttgact |
348 |
Q |
| |
|
|||| |||||| |||||||| |||||||||||||| ||| ||||||| ||| ||||| |||||| ||||||| ||| | ||||||| ||||| | |||| |
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|
| T |
29871859 |
tcttcgttcatttgtggggaagggcataataaaaactttattttctcatattggtggttgaacccaattgtatgtctactaaacatgtaatttttcgact |
29871760 |
T |
|
| Q |
349 |
tattgt |
354 |
Q |
| |
|
|||||| |
|
|
| T |
29871759 |
tattgt |
29871754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 401
Target Start/End: Original strand, 33906169 - 33906309
Alignment:
| Q |
264 |
ggggaggg-gcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaacatgcaa-tttcttgacttattgtaatcgac |
361 |
Q |
| |
|
|||||||| |||| |||||||| ||||||||| |||| ||||| |||| |||||||||||||||||| ||| || ||| || |||||||||||| | | |
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|
| T |
33906169 |
ggggagggagcatgataaaaaaattgttttctaggatcggtggttgaacaacattgtatatcttcaaaatatgtaattttttttacttattgtaataggc |
33906268 |
T |
|
| Q |
362 |
ttggagtaccccttgtattcaatttaat-aaaatcttgctt |
401 |
Q |
| |
|
|| ||||| | ||||||||| |||||| |||||||||||| |
|
|
| T |
33906269 |
ttcgagtatctcttgtattcgttttaataaaaatcttgctt |
33906309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 401
Target Start/End: Complemental strand, 26233370 - 26233209
Alignment:
| Q |
241 |
tatcgtgatcttagttcatatgtggggaggggcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaacatgcaatt |
340 |
Q |
| |
|
||||||| |||| ||| |||| |||| ||| ||||| |||||| |||||||| | ||| ||||| |||| | ||||||| |||||||| ||| |||| |
|
|
| T |
26233370 |
tatcgtggtcttggtttatatttgggaaggagcatattaaaaattttgtttttttatattggtggttgaactc-attgtatgtcttcaaagtatgtaatt |
26233272 |
T |
|
| Q |
341 |
tcttgacttat--tgtaatcgacttggagtaccccttgtattcaatttaataaaatcttgctt |
401 |
Q |
| |
|
||||||||||| |||||| | ||||||||||| |||| || ||| |||||||||||||| |
|
|
| T |
26233271 |
tcttgacttattatgtaatgggtttggagtacccattgttctcctttttataaaatcttgctt |
26233209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 247 - 352
Target Start/End: Complemental strand, 35283443 - 35283338
Alignment:
| Q |
247 |
gatcttagttcatatgtggggaggggcataataaaaaatttgttttctcggattagtggtcgaaccccattgtatatcttcaaaacatgcaatttcttga |
346 |
Q |
| |
|
|||||| |||||| |||| |||||| | ||||||||||||||||||||| | | ||||| | |||| |||| || ||||| || |||| |||||||||| |
|
|
| T |
35283443 |
gatcttggttcatttgtgaggagggacgtaataaaaaatttgttttctcataatggtggttggacccaattggatgtcttcgaagcatgtaatttcttga |
35283344 |
T |
|
| Q |
347 |
cttatt |
352 |
Q |
| |
|
|||||| |
|
|
| T |
35283343 |
cttatt |
35283338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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