View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13295_low_26 (Length: 426)

Name: NF13295_low_26
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13295_low_26
NF13295_low_26
[»] chr2 (1 HSPs)
chr2 (17-410)||(45366681-45367074)
[»] chr7 (3 HSPs)
chr7 (205-346)||(23422575-23422719)
chr7 (286-333)||(619605-619652)
chr7 (314-342)||(26881707-26881735)
[»] chr6 (1 HSPs)
chr6 (286-343)||(9685130-9685187)
[»] scaffold0229 (1 HSPs)
scaffold0229 (286-346)||(7473-7533)
[»] chr1 (1 HSPs)
chr1 (286-346)||(1281465-1281525)
[»] chr5 (3 HSPs)
chr5 (286-341)||(19726768-19726823)
chr5 (241-342)||(26387936-26388037)
chr5 (289-341)||(15596367-15596419)
[»] chr3 (2 HSPs)
chr3 (216-319)||(26023606-26023712)
chr3 (286-340)||(26023705-26023760)
[»] chr4 (1 HSPs)
chr4 (194-274)||(19266573-19266653)


Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Complemental strand, 45367074 - 45366681
Alignment:
Q  17 tgctattcacactttcacaaggaatcacttaatcttaaaatttagttttacagtagttagaatttgcttctcnnnnnnnaatactgtcgtgataactgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  45367074 tgctattcacactttcacaaggaatcacttaatcttaaaatttagttttacagtagttagaatttgcttctctttttttaatactgtcgtgataactgtt 45366975  T
Q  117 aacaacatttggtgctggttgtgctgttacgacaatccatctgtgataaagaaattcatttctatgcattgacggtgaaactttcttacacatgtgtcaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45366974 aacaacatttggtgctggttgtgctgttacgacaatccatctgtgataaagaaattcatttctatgcattgacggtgaaactttcttacacatgtgtcaa 45366875  T
Q  217 atcaaattacaccgtagtgccgcttttataggttagttcataaaatatctccacaaatttacatgactcatttgattggatgcatgtttgaaaaagtttt 316  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45366874 atcaaattacaccatagtgccgcttttataggttagttcataaaatatctccacaaatttacatgactcatttgattggatgcatgtttgaaaaagtttt 45366775  T
Q  317 acatcgtcagtgtatacaaattaaatccttgtgataaattttatttcgtataccgattccttctaatcatgatggtggttggaaataaaattct 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45366774 acatcgtcagtgtatacaaattaaatccttgtgataaattttatttcgtataccgattccttctaatcatgatggtggttggaaataaaattct 45366681  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 346
Target Start/End: Complemental strand, 23422719 - 23422575
Alignment:
Q  205 cacatgtgtcaaatcaaattacaccgtagtgccgcttttataggttagttcataaaatatctccacaaatt--tacatgac-tcatttgattggatgcat 301  Q
    |||||| ||| |||||| | |||||  |||| | |||||||| ||||| || ||||||||| ||||||||   |||||||| | |||||| ||| |||||    
T  23422719 cacatgcgtctaatcaagtcacaccaaagtgtcacttttatatgttagctcctaaaatatccccacaaatacctacatgacatgatttgaatggctgcat 23422620  T
Q  302 gtttgaaaaagttttacatcgtcagtgtatacaaattaaatcctt 346  Q
    || |||||||||||||||  ||| | |||||||||||||||||||    
T  23422619 gtgtgaaaaagttttacactgtcggcgtatacaaattaaatcctt 23422575  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 333
Target Start/End: Original strand, 619605 - 619652
Alignment:
Q  286 atttgattggatgcatgtttgaaaaagttttacatcgtcagtgtatac 333  Q
    ||||||||| |||||||| |||||||||||||||  ||||||||||||    
T  619605 atttgattgaatgcatgtgtgaaaaagttttacagtgtcagtgtatac 619652  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 342
Target Start/End: Original strand, 26881707 - 26881735
Alignment:
Q  314 tttacatcgtcagtgtatacaaattaaat 342  Q
    |||||||||||||||||||||||||||||    
T  26881707 tttacatcgtcagtgtatacaaattaaat 26881735  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 9685130 - 9685187
Alignment:
Q  286 atttgattggatgcatgtttgaaaaagttttacatcgtcagtgtatacaaattaaatc 343  Q
    ||||||||| |||||||| |  ||||||||||||||||||||||| ||||||||||||    
T  9685130 atttgattgaatgcatgtgtagaaaagttttacatcgtcagtgtagacaaattaaatc 9685187  T

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Target: scaffold0229 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 7473 - 7533
Alignment:
Q  286 atttgattggatgcatgtttgaaaaagttttacatcgtcagtgtatacaaattaaatcctt 346  Q
    |||||||||||||||||| | |||||  ||||||  || ||||||||||||||||||||||    
T  7473 atttgattggatgcatgtgtaaaaaaagtttacactgtaagtgtatacaaattaaatcctt 7533  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 1281465 - 1281525
Alignment:
Q  286 atttgattggatgcatgtttgaaaaagttttacatcgtcagtgtatacaaattaaatcctt 346  Q
    |||||||||||||||||| | |||||  ||||||  || ||||||||||||||||||||||    
T  1281465 atttgattggatgcatgtgtaaaaaaagtttacactgtaagtgtatacaaattaaatcctt 1281525  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 341
Target Start/End: Complemental strand, 19726823 - 19726768
Alignment:
Q  286 atttgattggatgcatgtttgaaaaagttttacatcgtcagtgtatacaaattaaa 341  Q
    |||||||||||||||||| | ||||||||||| | ||||  |||||||||||||||    
T  19726823 atttgattggatgcatgtgtaaaaaagttttagaccgtcgatgtatacaaattaaa 19726768  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 342
Target Start/End: Complemental strand, 26388037 - 26387936
Alignment:
Q  241 tttataggttagttcataaaatatctccacaaatttacatgac-tcatttgattggatgcatgtttgaaaaagttttacatcgtcagtgtatacaaatta 339  Q
    ||||||||||||||  ||||| |||||||||||| |||||| | | |||| ||||||||||||| | |||||   |||||| ||| ||||||| ||||||    
T  26388037 tttataggttagtttctaaaaaatctccacaaatatacatggcgtgatttaattggatgcatgtct-aaaaaaaattacattgtcggtgtatataaatta 26387939  T
Q  340 aat 342  Q
    |||    
T  26387938 aat 26387936  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 15596419 - 15596367
Alignment:
Q  289 tgattggatgcatgtttgaaaaagttttacatcgtcagtgtatacaaattaaa 341  Q
    ||||||||||||||| | ||| |||||||||| |||| ||||||| |||||||    
T  15596419 tgattggatgcatgtgtaaaagagttttacattgtcaatgtatacgaattaaa 15596367  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 319
Target Start/End: Complemental strand, 26023712 - 26023606
Alignment:
Q  216 aatcaaattacaccgtagtgccgcttttataggttagttcataaaatatctccacaaattt--acatgac-tcatttgattggatgcatgtttgaaaaag 312  Q
    |||||||| | ||| ||||||| ||||||||||||||||| |||||||| || |||||| |  || |||| | ||||||||||||||| || | |||| |    
T  26023712 aatcaaatcataccatagtgccacttttataggttagttcctaaaatatgtctacaaatatccacgtgacatgatttgattggatgcacgtgtaaaaagg 26023613  T
Q  313 ttttaca 319  Q
    |||||||    
T  26023612 ttttaca 26023606  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 26023705 - 26023760
Alignment:
Q  286 atttgattggatgcatgt-ttgaaaaagttttacatcgtcagtgtatacaaattaa 340  Q
    |||||||||||||||||| || ||||||||||||  ||||| ||||||||||||||    
T  26023705 atttgattggatgcatgtgttaaaaaagttttacgccgtcaatgtatacaaattaa 26023760  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 19266653 - 19266573
Alignment:
Q  194 aaactttcttacacatgtgtcaaatcaaattacaccgtagtgccgcttttataggttagttcataaaatatctccacaaat 274  Q
    ||||||| |||||||||| || ||||||||| |||   |||||| |||||| | |||||||  | ||||||||||||||||    
T  19266653 aaacttttttacacatgtatccaatcaaattgcacgaaagtgccacttttacaagttagttacttaaatatctccacaaat 19266573  T

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