View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_low_27 (Length: 420)
Name: NF13295_low_27
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 29008855 - 29009256
Alignment:
| Q |
1 |
cacagacgcaacggaagagaattgaagccaagacgaccacgaacatagctttcactgcccagactggcctcattttcctannnnnnnnnnnnnnnnnnnn |
100 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29008855 |
cacaaacgcaacggaagagaatcgaagccaagacgaccacgaacatagctttcactgcccagactggcctcattttcctacaaatcaaaccaaaaaatca |
29008954 |
T |
|
| Q |
101 |
nnnncacagagttaactatagcttcgattcaaattcttcatctaattgaatgaatataacaccgtaacagtgtcaaatgaaattgaagaattagtttcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
29008955 |
aaaacacagagttaactatagcttcgattcaaattcttcatctaatcgaatgaatacaacaccgtaacagtatcaaatgcaattgaagaattagtttcag |
29009054 |
T |
|
| Q |
201 |
tgaaaatagtagcgtgcaaatgcaaattatatagaaatgtgaaggtgaatttgaataaaatgaaaccagaatcggaatttgaagaatttaatcaagaagt |
300 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29009055 |
tgaaaattgtagcgtgcaaatgcaaattatatagaaatgtgaaggtgaatttgaataaaatgaaaccagaatcggaatttgaagaatgtaatcaagaagt |
29009154 |
T |
|
| Q |
301 |
tgaagcgaacatatatgatctttgcgcggttgaagagtttgttatgaattcagaacagagaatttggttatgtacctgcaaattcagaaagtgaaatctc |
400 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29009155 |
tgaagcgaacctatatgatctttgcgcggttgaagagtttgttatgaattcagaacagagaatgtggttatgtacctgcaaattcagaaagtgaaatctc |
29009254 |
T |
|
| Q |
401 |
ag |
402 |
Q |
| |
|
|| |
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|
| T |
29009255 |
ag |
29009256 |
T |
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