View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13295_low_28 (Length: 413)
Name: NF13295_low_28
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_28 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 106 - 398
Target Start/End: Original strand, 30005860 - 30006152
Alignment:
| Q |
106 |
tggttctaaagggttgcctttttctgagtatggtccttattggcgcagtatgaggaaattttgcactttgaaactttttagtgcttcaaaagttgagatg |
205 |
Q |
| |
|
|||||| |||||| || |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30005860 |
tggttccaaagggatggctttttctgagtatggtccttattggcgtagtgtgaggaaattttgcactttgaaactttttagtgcttcaaaagttgagatg |
30005959 |
T |
|
| Q |
206 |
tttggtcctattaggaaggagaagttggatgttttggttaaatctttggagaaagctgctttggagggtgaggttgtgaatgttagtgaggtagtagaga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
30005960 |
tttggtcctattaggaaggagaagttggatgttttggttatatctttggagaaagctgccttggagggtgaggttgtgaatgttagtgaggttgtagaga |
30006059 |
T |
|
| Q |
306 |
atcttattgaggatattgtgtataagatgatattgggtagaggtaagtatgagcaatttgacatgaataagttagttctagaagcaatggctt |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30006060 |
atcttattgaggatattgtgtataagatgatgtttggtcggagtaagtatgagcaatttgacatgaataagttagttctagaagcaatggctt |
30006152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 106 - 372
Target Start/End: Original strand, 29999422 - 29999688
Alignment:
| Q |
106 |
tggttctaaagggttgcctttttctgagtatggtccttattggcgcagtatgaggaaattttgcactttgaaactttttagtgcttcaaaagttgagatg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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|
| T |
29999422 |
tggttctaaagggttgcctttttctgagtatggtccttattggcgcagtatgaggaaattttgcactttgaaacttcttagtgcttcaaaagttgagaag |
29999521 |
T |
|
| Q |
206 |
tttggtcctattaggaaggagaagttggatgttttggttaaatctttggagaaagctgctttggagggtgaggttgtgaatgttagtgaggtagtagaga |
305 |
Q |
| |
|
| ||||||||||| || ||| |||||| |||||||||||| ||||| |||||||| |||||| |||||||||||||||||||||||| | || |||| |
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|
| T |
29999522 |
tcgggtcctattagaaaagaggagttgggtgttttggttaacactttgaagaaagcttctttggtaggtgaggttgtgaatgttagtgagattgtcgaga |
29999621 |
T |
|
| Q |
306 |
atcttattgaggatattgtgtataagatgatattgggtagaggtaagtatgagcaatttgacatgaa |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
29999622 |
atcttattgaggatattgtgtataagatgatattgggtagaggtaagtatgagcaatttgacttgaa |
29999688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 106 - 397
Target Start/End: Original strand, 29963113 - 29963404
Alignment:
| Q |
106 |
tggttctaaagggttgcctttttctgagtatggtccttattggcgcagtatgaggaaattttgcactttgaaactttttagtgcttcaaaagttgagatg |
205 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||| ||| | | |||| ||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
29963113 |
tggttccaaagggttggctttttctgagtatggtccttattggcgtagtgtaaagaaactttgcactttgaaacttcttagtgcttcaaaagttgagatg |
29963212 |
T |
|
| Q |
206 |
tttggtcctattaggaaggagaagttggatgttttggttaaatctttggagaaagctgctttggagggtgaggttgtgaatgttagtgaggtagtagaga |
305 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||| || || ||||||| || ||||| |||||||||||||||||||||||| | ||||||| |
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|
| T |
29963213 |
tttggtcctattaggaagaaggagttggatgttttggttaagtcattagagaaagttgttttggtaggtgaggttgtgaatgttagtgagattgtagaga |
29963312 |
T |
|
| Q |
306 |
atcttattgaggatattgtgtataagatgatattgggtagaggtaagtatgagcaatttgacatgaataagttagttctagaagcaatggct |
397 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| | || ||||| |||| ||||| ||||||| |
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|
| T |
29963313 |
atcttattgaagatattgtgtataagatgatattgggtaggggtaagtatgagcaatttgatttaaagaagttggttcaagaaggaatggct |
29963404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 106 - 397
Target Start/End: Complemental strand, 30011685 - 30011394
Alignment:
| Q |
106 |
tggttctaaagggttgcctttttctgagtatggtccttattggcgcagtatgaggaaattttgcactttgaaactttttagtgcttcaaaagttgagatg |
205 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||| ||| | | |||| ||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
30011685 |
tggttccaaagggttggctttttctgagtatggtccttattggcgtagtgtaaagaaactttgcactttgaaacttcttagtgcttcaaaagttgagatg |
30011586 |
T |
|
| Q |
206 |
tttggtcctattaggaaggagaagttggatgttttggttaaatctttggagaaagctgctttggagggtgaggttgtgaatgttagtgaggtagtagaga |
305 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||| || || ||||||| || ||||| |||||||||||||||||||||||| | ||||||| |
|
|
| T |
30011585 |
tttggtcctattaggaagaaggagttggatgttttggttaagtcattagagaaagttgttttggtaggtgaggttgtgaatgttagtgagattgtagaga |
30011486 |
T |
|
| Q |
306 |
atcttattgaggatattgtgtataagatgatattgggtagaggtaagtatgagcaatttgacatgaataagttagttctagaagcaatggct |
397 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| | || ||||| |||| ||||| ||||||| |
|
|
| T |
30011485 |
atcttattgaagatattgtgtataagatgatattgggtaggggtaagtatgagcaatttgatttaaagaagttggttcaagaaggaatggct |
30011394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 106 - 367
Target Start/End: Original strand, 29952008 - 29952269
Alignment:
| Q |
106 |
tggttctaaagggttgcctttttctgagtatggtccttattggcgcagtatgaggaaattttgcactttgaaactttttagtgcttcaaaagttgagatg |
205 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||||||||||||||||| ||| |||||||| |||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
29952008 |
tggttccaaagggttggctttttctaagtatggtccttattggcgtagtgtgaggaaactttgcactttaaaacttcttagtgcttcaaaagttgagatg |
29952107 |
T |
|
| Q |
206 |
tttggtcctattaggaaggagaagttggatgttttggttaaatctttggagaaagctgctttggagggtgaggttgtgaatgttagtgaggtagtagaga |
305 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||| |||| || ||||||||||||||||||| | ||||||||||||||||||||||||| ||||||| |
|
|
| T |
29952108 |
tttggttctattaggaaggaaaagttggatgttttgattaagtcattggagaaagctgctttggtgagtgaggttgtgaatgttagtgaggttgtagaga |
29952207 |
T |
|
| Q |
306 |
atcttattgaggatattgtgtataagatgatattgggtagaggtaagtatgagcaatttgac |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | | |||||||| ||||||||| |
|
|
| T |
29952208 |
atcttattgaggatattgtgtataagatgatattgggtcggagcaagtatgatcaatttgac |
29952269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 106 - 372
Target Start/End: Complemental strand, 30045294 - 30045028
Alignment:
| Q |
106 |
tggttctaaagggttgcctttttctgagtatggtccttattggcgcagtatgaggaaattttgcactttgaaactttttagtgcttcaaaagttgagatg |
205 |
Q |
| |
|
|||||| |||||| || |||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30045294 |
tggttccaaagggatggctttttgtgagtatggtccttattggcgtagtgtgaggaaattttgcactttgaaacttcttagtgcttcaaaagttgagatg |
30045195 |
T |
|
| Q |
206 |
tttggtcctattaggaaggagaagttggatgttttggttaaatctttggagaaagctgctttggagggtgaggttgtgaatgttagtgaggtagtagaga |
305 |
Q |
| |
|
| |||||||||||| || ||| ||||| | |||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
30045194 |
tctggtcctattagaaaagaggagttgagtattttggttaacactttgaagaaagctgctttggttggtgaggttgtgaatgttagtgaggttgtagaga |
30045095 |
T |
|
| Q |
306 |
atcttattgaggatattgtgtataagatgatattgggtagaggtaagtatgagcaatttgacatgaa |
372 |
Q |
| |
|
|||| || || ||||||||||||||| |||| || ||| | |||||||||||||||||||| |||| |
|
|
| T |
30045094 |
atctaatagaagatattgtgtataagttgatgtttggtcggagtaagtatgagcaatttgacttgaa |
30045028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 141 - 357
Target Start/End: Original strand, 29943922 - 29944138
Alignment:
| Q |
141 |
cttattggcgcagtatgaggaaattttgcactttgaaactttttagtgcttcaaaagttgagatgtttggtcctattaggaaggagaagttggatgtttt |
240 |
Q |
| |
|
|||||||||| ||| |||| ||| |||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29943922 |
cttattggcgtagtgtgagaaaactttgtacttcaaaacttcttagtgcttcgaaagttgagatgtttggtcctattaggaaggagaagttggatgtttt |
29944021 |
T |
|
| Q |
241 |
ggttaaatctttggagaaagctgctttggagggtgaggttgtgaatgttagtgaggtagtagagaatcttattgaggatattgtgtataagatgatattg |
340 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||| | ||| |
|
|
| T |
29944022 |
ggttaaatctttggagaaagctgctctggagggtgaggttgtgaatgttagtgaggctgtagagaatgttatagaggatattgtgtataagatggtgttg |
29944121 |
T |
|
| Q |
341 |
ggtagaggtaagtatga |
357 |
Q |
| |
|
||| | |||||||||| |
|
|
| T |
29944122 |
ggtcggagtaagtatga |
29944138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 124 - 372
Target Start/End: Complemental strand, 30071106 - 30070858
Alignment:
| Q |
124 |
tttttctgagtatggtccttattggcgcagtatgaggaaattttgcactttgaaactttttagtgcttcaaaagttgagatgtttggtcctattaggaag |
223 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
30071106 |
tttttctgactatggtccttattggcgtagtgtgaggaaattttgcactttgaaacttcttagtgcttcaaaagttgagatgtctggtcctattagaaaa |
30071007 |
T |
|
| Q |
224 |
gagaagttggatgttttggttaaatctttggagaaagctgctttggagggtgaggttgtgaatgttagtgaggtagtagagaatcttattgaggatattg |
323 |
Q |
| |
|
||| ||||| | |||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || ||||||| |
|
|
| T |
30071006 |
gaggagttgagtattttggttaacactttgaagaaagctgctttggttggtgaggttgtgaatgttagtgaggtagtagagaatctaatagaagatattg |
30070907 |
T |
|
| Q |
324 |
tgtataagatgatattgggtagaggtaagtatgagcaatttgacatgaa |
372 |
Q |
| |
|
|||||||| |||| || || | |||||||||||||||||||| |||| |
|
|
| T |
30070906 |
tgtataagttgatgtttggacggagtaagtatgagcaatttgacttgaa |
30070858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 113 - 398
Target Start/End: Original strand, 29990725 - 29991010
Alignment:
| Q |
113 |
aaagggttgcctttttctgagtatggtccttattggcgcagtatgaggaaattttgcactttgaaactttttagtgcttcaaaagttgagatgtttggtc |
212 |
Q |
| |
|
||||||||| | |||||| |||| | ||||||||||| ||| | | |||| | ||||||||||||||| ||||||||||||||||||||| || |||| |
|
|
| T |
29990725 |
aaagggttggcgttttctaagtacgacccttattggcgtagtgtaaagaaactctgcactttgaaacttcttagtgcttcaaaagttgagaagtcgggtc |
29990824 |
T |
|
| Q |
213 |
ctattaggaaggagaagttggatgttttggttaaatctttggagaaagctgctttggagggtgaggttgtgaatgttagtgaggtagtagagaatcttat |
312 |
Q |
| |
|
||||||| | ||| |||||| | |||||||||| ||||| | |||||| |||||| ||||||||||||||||| |||||| | ||||||||| |||| |
|
|
| T |
29990825 |
ctattagaacagaggagttgggtattttggttaacactttgaaaaaagcttctttggtaggtgaggttgtgaatgtcagtgagattgtagagaatgttat |
29990924 |
T |
|
| Q |
313 |
tgaggatattgtgtataagatgatattgggtagaggtaagtatgagcaatttgacatgaataagttagttctagaagcaatggctt |
398 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| ||||| | |||||| |
|
|
| T |
29990925 |
tgaagatattgtgtataagatgatattgggtagaggtaagtatgagcaatttgatttgaagaagttggttcaagaaggattggctt |
29991010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 29999053 - 29999138
Alignment:
| Q |
15 |
cagccaaaccaaaccatccattgtggtcatgtcttttgcagcaacaactatgctctatttccttctcttcactttcatataccttt |
100 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29999053 |
cagccaaaccaaatcattcattgtggtcatgtcttttgcagcaacaactatgctctatttccttctcttcactttcatataccttt |
29999138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 201
Target Start/End: Original strand, 43805743 - 43805838
Alignment:
| Q |
106 |
tggttctaaagggttgcctttttctgagtatggtccttattggcgcagtatgaggaaattttgcactttgaaactttttagtgcttcaaaagttga |
201 |
Q |
| |
|
|||||||||||||||| |||| |||| || ||| | |||||||| | ||||||||| ||||||||||| | ||||| |||||||| |||||||| |
|
|
| T |
43805743 |
tggttctaaagggttggtttttgctgaatacggtgcctattggcgtaatatgaggaaggtttgcactttgcagcttttaagtgcttctaaagttga |
43805838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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