View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_low_3 (Length: 752)
Name: NF13295_low_3
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 243 - 734
Target Start/End: Original strand, 32723151 - 32723673
Alignment:
| Q |
243 |
gttagttcagtggcttaaacacctcaaaacaaatgtatttaacactctttagattttcttcaattaaaaattatggacgaccttcgaacttttgatcagg |
342 |
Q |
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| T |
32723151 |
gttagttcagtggcttaaacacctcaaaacaaatgtatttaacactctttagattttcttcaattaaaaattatggacgaccttcgaacttttgatcagg |
32723250 |
T |
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| Q |
343 |
ttctaaatcaaaatattcaccgctagagttaagggacttgttggattgactggggacactggaagtcgaatcaagagtgttagacattatgttctaaggt |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32723251 |
ttctaaatcaaaatattcaccgctagagttaagggacttgttggattgactggggacactggaagtcgaatcaagagtgttagacattatgttcttaggt |
32723350 |
T |
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| Q |
443 |
gatgaaagtgaaggtgaac--------------tagaaagtggtttcaacttaaggtattagtgatcaagtaattgaaccgccaattcatagaaaaatac |
528 |
Q |
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| T |
32723351 |
gatgaaagtgaaggtgaactagaagaataagagtagaaagtggtttcaatttaaggtattagtgatcaagtaattgaaccaccaattcatagaaaaatac |
32723450 |
T |
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| Q |
529 |
caatcgttaaagcacaagacccattactcattagtcaaagttagcctgagaatccgcgacgaatctaggatgagtaagattagtgg----attgttgatt |
624 |
Q |
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| T |
32723451 |
caatcgttaaagcacaagacccattactcattagtcaaagttagcctgagaatccgcgacgaatctaggatgagtaagattagtggattaattgttgatt |
32723550 |
T |
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| Q |
625 |
gaggaagaaagaaatcagtttgttggattgatta--------------tgtttcatgtggaattatcatgagttgtccacttgggctagataaattagtc |
710 |
Q |
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| T |
32723551 |
gaggaagaaagaaatcagtttgttggattgattatgttttacagagattgtttcatgtggaattatcatgagttgtccacttgggctagat-aattagtc |
32723649 |
T |
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| Q |
711 |
aaccacatgctcccatttatagaa |
734 |
Q |
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| T |
32723650 |
aaccagatgctcccatttatagaa |
32723673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 32722928 - 32723091
Alignment:
| Q |
20 |
acgaaaaatatcgtgaaactaagaaatcgagaaaaacatagggcgtcatgtatcccctacaatgggagcattcacacattatccgttttggcaagtatgg |
119 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| |||| |||||||||||||||||||||||| |
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| T |
32722928 |
acgaaaaatgtcgtgaaactaagaaatcgaggaaaacatagggcgtcatgtatcccctgcaacgggagcactcacgcattatccgttttggcaagtatgg |
32723027 |
T |
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| Q |
120 |
ataagtgttggtctataaatattgaacttttaaaaaatttagacacaaaatcaattaaactagc |
183 |
Q |
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| T |
32723028 |
ataagtgttggtctataaatattgaacttttaaaaaatttagacacaaaatcaattaaactagc |
32723091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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