View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_low_30 (Length: 398)
Name: NF13295_low_30
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 106 - 381
Target Start/End: Complemental strand, 41502707 - 41502434
Alignment:
| Q |
106 |
aataaacatcacatgtattaatttattttaacgattaatgaaacacatacataattcaagaagtaatggatgattatatatatnnnnnnnn----ggagt |
201 |
Q |
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| T |
41502707 |
aataaacatcacatgtattaatttattttaacgattaatgaaacacata----attcaagaagtaatggatgattatataaaaaaaaaaaaaaaaggagt |
41502612 |
T |
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| Q |
202 |
aatagatgattaatttgtccatatgactgacaatgtttgtcccctctttagtgaaactgatatatatattctgaacttctgatccgtatatgtgttgtct |
301 |
Q |
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| T |
41502611 |
aatagatgattaatttgtccatatgactgacaatgtttgtcccctctttagtgaaactgatatatat--tctgaacttctgatccgtatatgtgttgtct |
41502514 |
T |
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| Q |
302 |
acctcctgaaccaaagaggtacattcattctcaagtgcaagcaagaatttggtttcagaacaacatttttctcaggtagg |
381 |
Q |
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| T |
41502513 |
acctcctgaaccaaagaggtacattcattctcaagtgcaagcaagaatttggtttcagaacaacatttttctcaggtagg |
41502434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 41502793 - 41502743
Alignment:
| Q |
6 |
aaagtgatttctcctccttcaattgaattttctattagtacacttcaattt |
56 |
Q |
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| T |
41502793 |
aaagtgatttctcctccttcaattgaattttctatcagtacacttcaattt |
41502743 |
T |
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