View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_low_31 (Length: 391)
Name: NF13295_low_31
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 7 - 372
Target Start/End: Complemental strand, 6582471 - 6582106
Alignment:
| Q |
7 |
tagataatactaatattccggttacgtcgaagtgaaacaataactagtttatggttatcttgcagtgactcgaacctatgataataattttaaccgatgc |
106 |
Q |
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| T |
6582471 |
tagataagactaatattccggttacgtcggagtgaaacaataactagtttatggttatcttgcagtgactcgaacctatgataataattttaaccaatgc |
6582372 |
T |
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| Q |
107 |
gccaaagcttcctttcttatattaaaattactaagttgcattaaaattttcttgcaactttattatttggacaaccttataagggccaaacatattacag |
206 |
Q |
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| T |
6582371 |
gccaaagcttcctttcttatattaaaattactaagttgcattaaaattttcttgcaactttattattttgacaaccttataagggccaaacatattacag |
6582272 |
T |
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| Q |
207 |
gtttattgttggcaacctaacttgatggtttattgcagaaagttataataaaattttcctatcattttggtgacaaatgtgcaagatttaagttgaaaat |
306 |
Q |
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| T |
6582271 |
gtttattgttggcaacctaacttgatggtttattgcagaaagttataataaaattttcctatcattttggtgacaaatgtgcaagatttaagttgaaaac |
6582172 |
T |
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| Q |
307 |
agacagagtaagtttatgcacattaatttggactgctatttggttgatttcgccttttgtctttct |
372 |
Q |
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| T |
6582171 |
agacagagtgagtttatgcacattaatttggactgctatttggttgatttcgccttttgtctttct |
6582106 |
T |
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