View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_low_32 (Length: 381)
Name: NF13295_low_32
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 14418652 - 14419013
Alignment:
| Q |
1 |
ctaacttcaaaggagttcttgttcttgacaacgatgtcatacatgtgcatggacttgaacctgttgaaatccataggaagggagataagatgaacggttg |
100 |
Q |
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| T |
14418652 |
ctaacttcaaaggagttcttgttcttgacaacgatgtcatacatgtgcatggacttgaacctgttgaaatccataggaagggagataagatgaacggttg |
14418751 |
T |
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| Q |
101 |
agcgtttgtggaactggaggaggtcagggtcatcatagtaacgctcccaccccaatgaacttagcttgcgctctaaaacggcataagaggtgataatctc |
200 |
Q |
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| T |
14418752 |
agcgtttgtggaactggaggaggtcagggtcatcatagtaacgctcccaccccaatgaacttagcttgcgctctaaaacggcataagaggtgataatctc |
14418851 |
T |
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| Q |
201 |
gttgcttgcggtatgaaccaacacttttcgccgtccgcctgacccttggcggccaccctccatcgcctccgcgccatccactagccgcaccacgccgttc |
300 |
Q |
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| T |
14418852 |
gttgcttgcggtatgaaccaacaccttgcgccgtccgcctgacccttggcggccaccctccatcgcctccacgccatccactagccgcaccacgccgttc |
14418951 |
T |
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| Q |
301 |
ttgaaaacccaaaccccagacattattggaatagtatacaaatggagcaagaaagaagaaac |
362 |
Q |
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| T |
14418952 |
ttgaaaacccaaaccccagacattattggaatagtatacaaatggagcaagaaagaagaaac |
14419013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 49633977 - 49633923
Alignment:
| Q |
14 |
agttcttgttcttgacaacgatgtcatacatgtgcatggacttgaacctgttgaa |
68 |
Q |
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| T |
49633977 |
agttcttgttcttgacgacaatgtcatacatgtgcatgggcttgagcttgttgaa |
49633923 |
T |
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