View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_low_34 (Length: 373)
Name: NF13295_low_34
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 48092790 - 48092441
Alignment:
| Q |
1 |
tgctccaagatcgtatagtctctgatattaaacatcacaacaatatttcaaaattcaaatgttattattattctaacatatatatatcaatcaacacgct |
100 |
Q |
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| T |
48092790 |
tgctccaagatcgtatagtctctgatattaaacatcacaacaatatttcaaaattcaaatgttattattattctaacatatatat--caatcaacacgct |
48092693 |
T |
|
| Q |
101 |
agctaactacttcataaaacaacaaattnnnnnnnctatatcttaataaactatatatgtttgtgtttagtatcatggtaggtatgaatcgtcgtgattc |
200 |
Q |
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|||||||||||||||| |||||||| | | | || |||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
48092692 |
agctaactacttcatacaacaacaa-------caacaaaa----aaaaaactatatatgtttgtgtttagtatcatggtaggtgtgaatggtcgtgattc |
48092604 |
T |
|
| Q |
201 |
taacatacccaccatacactacattatcattacatccgaaatgcctcatttattgagatctatgagatgagataaaaagaacacttctctttctctatca |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48092603 |
taacatacccaccatacactacattaacattacatccgaaatgcctcatttattgagatctatgagatgagataaaaagaacacttctctttctctatca |
48092504 |
T |
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| Q |
301 |
taaaacaaaaagaagaaaaagagcagttaatccatgagacagacaagggcacctaccatgcac |
363 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
48092503 |
taaaacaaaacgaagaaaaagagcagttaatctatgagacagacaagggcacctaccatgcac |
48092441 |
T |
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