View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_low_38 (Length: 344)
Name: NF13295_low_38
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 5 - 329
Target Start/End: Complemental strand, 16357983 - 16357659
Alignment:
| Q |
5 |
gagagagatgaaaatgacacaaaacaccctacatatagaggtgtaagaatgagagcatggggaaaatgggtatctgaaattcgtgagccaagaaagaagt |
104 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16357983 |
gagagaaatgaaaatgacacaaaacaccctacatatagaggtgtaagaatgagagcatggggaaaatgggtatctgaaattcgtgagccaagaaagaagt |
16357884 |
T |
|
| Q |
105 |
caagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgatgtagctgctttagccataaagggtcattcagcttacctcaattt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16357883 |
caagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgatgtagctgctttagccataaagggtcattcagcttacctcaattt |
16357784 |
T |
|
| Q |
205 |
ccctaatttggctcaaaatcttccgaggccttcgactacatcacctaaggacattcaacttgcagctgcaaaagcagcagcaattgtgtttgaggagatt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||| |
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| T |
16357783 |
ccctaatttggctcaaaatcttccgaggccttcgactacatcacctaaggacattcaagttgcagctgcaaaagcagcagccattgtatttgaggagatt |
16357684 |
T |
|
| Q |
305 |
aaggaagatcaagatcaagatcaag |
329 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
16357683 |
aaggaagatcaagatcaagatcaag |
16357659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 83 - 208
Target Start/End: Complemental strand, 505630 - 505505
Alignment:
| Q |
83 |
attcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgatgtagctgctttagccataaagg |
182 |
Q |
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||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
505630 |
attcgtgagccaaagaaaaaatcaagaatatggcttggaacataccctacagctgaaatggcagctagagcacatgatgtagctgctttagctataaagg |
505531 |
T |
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| Q |
183 |
gtcattcagcttacctcaatttccct |
208 |
Q |
| |
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| T |
505530 |
gtcattcagcataccttaatttccct |
505505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 4268654 - 4268769
Alignment:
| Q |
62 |
tggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgatg |
161 |
Q |
| |
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||||||||||||||||||||||| || || ||| | || || |||||||| ||||| ||||||| | | ||| | ||||||||||||||||| || |||| |
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| T |
4268654 |
tggggaaaatgggtatctgaaatccgcgaaccacgcaaaaaatcaagaatctggctaggaacattctcaacaccagaaatggcagctagagcacacgatg |
4268753 |
T |
|
| Q |
162 |
tagctgctttagccat |
177 |
Q |
| |
|
|||| |||||| |||| |
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| T |
4268754 |
tagcagctttaaccat |
4268769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 9776648 - 9776593
Alignment:
| Q |
62 |
tggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggct |
117 |
Q |
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|||||||||||||| || || ||| | ||||||||||| ||||||||||||||||| |
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| T |
9776648 |
tggggaaaatgggtgtcagagattagagagccaagaaaaaagtcaagaatatggct |
9776593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 192
Target Start/End: Complemental strand, 43561916 - 43561786
Alignment:
| Q |
62 |
tggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgatg |
161 |
Q |
| |
|
||||||||||||||||| ||||| || || || | || || ||| |||| ||||||||||| ||| |||| ||||||||||||||||||| ||||||| |
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| T |
43561916 |
tggggaaaatgggtatcggaaatccgcgaacctcgcaaaaaatcacgaatctggcttggaacttacgctactcctgaaatggcagctagagcgcatgatg |
43561817 |
T |
|
| Q |
162 |
tagctgctttagccataaagggtcattcagc |
192 |
Q |
| |
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| |||||||| ||||||||||||||||| |
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| T |
43561816 |
ttgctgctttgagtataaagggtcattcagc |
43561786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 36077813 - 36077744
Alignment:
| Q |
98 |
aagaagtcaagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgatgtagctg |
167 |
Q |
| |
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||||| |||||||||||||| ||||| ||||||||| | ||||||||||||| ||| ||||||||||||| |
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| T |
36077813 |
aagaaatcaagaatatggctaggaacttaccctacaccagaaatggcagctatagcacatgatgtagctg |
36077744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 41521670 - 41521801
Alignment:
| Q |
38 |
tatagaggtgtaagaatgagagcatggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctg |
137 |
Q |
| |
|
|||||||| ||||||||| | |||||| ||||||||||| || ||| | ||||||||||| || |||||||| ||||| ||||| | || || ||| |
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| T |
41521670 |
tatagaggagtaagaatgcgtcaatggggcaaatgggtatcagagattagagagccaagaaaaaaatcaagaatttggctcggaacttttccaactcctg |
41521769 |
T |
|
| Q |
138 |
aaatggcagctagagctcatgatgtagctgct |
169 |
Q |
| |
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| ||||| ||||||||||||||||| |||||| |
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| T |
41521770 |
atatggctgctagagctcatgatgtggctgct |
41521801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 144
Target Start/End: Original strand, 33589180 - 33589286
Alignment:
| Q |
38 |
tatagaggtgtaagaatgagagcatggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctg |
137 |
Q |
| |
|
|||||||| || |||||| || ||||||||||||||||||| ||||| ||||| ||| ||||||| |||| |||||||||||||| |||| |||| |
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| T |
33589180 |
tatagaggagttagaatgcgaacatggggaaaatgggtatccgaaatccgtgaaccacgaaagaaaagtcgaatctggcttggaacatatgctacggctg |
33589279 |
T |
|
| Q |
138 |
aaatggc |
144 |
Q |
| |
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||||||| |
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| T |
33589280 |
aaatggc |
33589286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 33602299 - 33602408
Alignment:
| Q |
38 |
tatagaggtgtaagaatgagagcatggggaaaatgggtatctgaaattcgtgagccaagaaagaagtcaagaatatggcttggaacataccctacagctg |
137 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||| |||||||| || || ||| ||||||| |||| ||||| ||||||| | | || |||| |
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| T |
33602299 |
tatagaggtgtaagaatgcgaacatggggaaaatgggtttctgaaatccgagaaccacgaaagaaaaaccgaatctggctaggaacattcgcaaccgctg |
33602398 |
T |
|
| Q |
138 |
aaatggcagc |
147 |
Q |
| |
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|||||||||| |
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| T |
33602399 |
aaatggcagc |
33602408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 169
Target Start/End: Original strand, 51237916 - 51238023
Alignment:
| Q |
62 |
tggggaaaatgggtatctgaaattcgtgagcc-aagaaagaagtcaagaatatggcttggaacataccctacagctgaaatggcagctagagctcatgat |
160 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||| || || |||||||||| || |||| || ||| | |||||||||||| |||| || ||| |
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|
| T |
51237916 |
tggggaaaatgggtgtccgaaattcgtgagcctaagaaa-aaatcccgaatatggctcggcacatttcccacaccggaaatggcagctcgagcacacgat |
51238014 |
T |
|
| Q |
161 |
gtagctgct |
169 |
Q |
| |
|
||||||||| |
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|
| T |
51238015 |
gtagctgct |
51238023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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