View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_low_4 (Length: 732)
Name: NF13295_low_4
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 12774285 - 12773956
Alignment:
| Q |
18 |
gttgatgatgaaggtgttgatgaattctgttgattcatctgattctgatcctcttgtgagattgtaaagaaagatgcagctgaaaatgatgttgccatat |
117 |
Q |
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| T |
12774285 |
gttgatgatgaaggtgttgatgaattctgttgattcatctgattctgatcctcttgtgagattgtaaagaaagatgcagctgaaaatgatgttgccatat |
12774186 |
T |
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| Q |
118 |
ctaaagaaaaatcaagaagctgaagtagagagatgagttaagagggtcaaagaaaaatgaatgaaaatcaattctccatgactaatacttgatatgaatt |
217 |
Q |
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| T |
12774185 |
ctatagaaaaatcaagaagctgaagtagagagatgagttaagagggtcaaagaaaaatgaatgaaaatcaattctccatgact-atacttgatatgaatt |
12774087 |
T |
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| Q |
218 |
tttctctcaagttgggtttattttaaatgaaaaatttctgaggtagattcattatgaatcttttcattgatttggtgtcatgcatatacaccaacacata |
317 |
Q |
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| T |
12774086 |
tttctctcaagttgggtttattttaaatgaaaattttctgaggtagattcattatgaatcttttcattgatttggtgtcatgcatatacaccaacacata |
12773987 |
T |
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| Q |
318 |
ttatacacacatgcaccatttcacttggacc |
348 |
Q |
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| T |
12773986 |
ttatacacacatgcaccatttcacttggacc |
12773956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 427 - 686
Target Start/End: Complemental strand, 12773855 - 12773596
Alignment:
| Q |
427 |
acaaaatgaaattttaatgagagaaagagagagggtgtatggcctacggtattgtggacccaaacttttgtcatgtaacgacatataggatgtgtgtaag |
526 |
Q |
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| T |
12773855 |
acaaaatgaaattttaatgagagaaagagagagggtgtatggcctacggtattgtggacccaaacttttgtcatgtaacgacatataggatgtgtgtaag |
12773756 |
T |
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| Q |
527 |
gagtaagaaacagctatagctatatacatcactctctctctttcactttctctatcttgtttcgcatattctgactcactcccagacaaactttcacgta |
626 |
Q |
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| T |
12773755 |
gagtaagaaacagctatagctatatacaccactctctctctttcactttctctatcttgtttcgcatattctgactcactcccagacaaactttcacgta |
12773656 |
T |
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| Q |
627 |
ccaccctgccccacttaaaccttacaaaaaatgtttaaagaagtaagaaaaaagtgatga |
686 |
Q |
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| T |
12773655 |
ccaccctgccccacttaaaacttacaaaaaatgtttaaagaagtaagaaaaaagtgatga |
12773596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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