View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_low_40 (Length: 327)
Name: NF13295_low_40
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 10474636 - 10474344
Alignment:
| Q |
1 |
tcatcctaatttgtagtttctgatgtgacatataaactgaatcaccaatttagtccccaaatttataggaagcagtcaatttagccaaaaatat--tcag |
98 |
Q |
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| T |
10474636 |
tcatcctaatttgtagtttctgatgtgacatataaactgaatcaccaatttagtccccaaatttatagtcagaagtcaatttagccaaaaagattctcag |
10474537 |
T |
|
| Q |
99 |
tatctcaaaatagctcttcaaattgaaaaggaaatatgctaacaaacctaaagtggaaattttcttctgggaattatgtaataaacacatagaaacttta |
198 |
Q |
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| T |
10474536 |
tatctcaaaatagctctgaaaattgaaaagggaa-atgctaacaaacctaaattggaaattttcttctgagaattgtgtattcaacatattgaaacttta |
10474438 |
T |
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| Q |
199 |
aaaatcaaatttttcta---agtaaaacttatcaagtatttcc-ttttttgaatacttaacaattgttagcatgacccaaatgaaaatcataac |
288 |
Q |
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| T |
10474437 |
aaaatcaaatttttttacatactaaaacttatcaagtatttcctttttttgaatacttaacaattgttagcatgacccaattgaaaatcataac |
10474344 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 12880125 - 12880200
Alignment:
| Q |
182 |
aacacatagaaactttaaaaatcaaatttttctaagtaaaacttatcaagtatttccttttttgaatacttaacaa |
257 |
Q |
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| T |
12880125 |
aacacattgaaattttaaaaagtaattttttctacataaaacttatcaattatttccatttttgaatccttaacaa |
12880200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 273
Target Start/End: Complemental strand, 3965456 - 3965379
Alignment:
| Q |
196 |
ttaaaaatcaaatttttctaagtaaaacttatcaagtatttccttttttgaatacttaacaattgttagcatgaccca |
273 |
Q |
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||||||| ||| |||||||| ||||| ||| ||| | ||| ||||||| ||| |||||||||||||||||||||||| |
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| T |
3965456 |
ttaaaaaacaattttttctacataaaatttagcaattgttttcttttttaaatccttaacaattgttagcatgaccca |
3965379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 35116902 - 35116974
Alignment:
| Q |
185 |
acatagaaactttaaaaatcaaatttttctaagtaaaacttatcaagtatttccttttttgaatacttaacaa |
257 |
Q |
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|||| ||||||| ||||| ||||||||||| ||||| |||| || ||||||||||||||||| |||||||| |
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| T |
35116902 |
acattgaaacttcaaaaaggaaatttttctacataaaatttataaattatttccttttttgaatccttaacaa |
35116974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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