View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_low_45 (Length: 308)
Name: NF13295_low_45
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 27746155 - 27745882
Alignment:
| Q |
19 |
gtgctaacctgctcatcagtaaatttccatctcaaggtcctcttgcgaagggggtcatcatcatcccaagtaaaatcaactttactgtgctgaagtgctc |
118 |
Q |
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| T |
27746155 |
gtgctaacctgctcatcagtaaatttccgtctcaaggtccttttgcgaagggggtcatcatcatcccaagtaaaatcaactttactgtgctgaagtgctc |
27746056 |
T |
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| Q |
119 |
gaggaccgaaatctttgactacgtagtttgcaggtacctgagcattgataggagtcaaaatataccaattattatcatagagcataaataagcatatcat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27746055 |
gaggaccgaaatctttgactacgtagtttgcaggtacctgagcattgataggagtcaaaatataccaattattatcatagagcataaataagcatatcat |
27745956 |
T |
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| Q |
219 |
gtgttatatacctcagtcacgacatcctcagactcctgtttgaactcccaaaagtcaggaataaaccttaaatc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27745955 |
gtgttatatacctcagtcacgacatcctcagactcctgtttgaactcccaaaagtcaggaataaaccttaaatc |
27745882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 38528381 - 38528471
Alignment:
| Q |
64 |
cgaagggggtcatcatcatcccaagtaaaatcaactttactgtgctgaagtgctcgaggaccgaaatctttgactacgtagtttgcaggta |
154 |
Q |
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| T |
38528381 |
cgaagaggttcatcctcatcccaagtaagttcaactttactgtgctgaagtgcccgagaatagaaatctttgttctcgtagtttgcaggta |
38528471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 49514578 - 49514304
Alignment:
| Q |
19 |
gtgctaacctgctcatcagtaaatttccatctcaaggtcctcttgcgaagggggtcatcatcatcccaagtaaaatcaactttactgtgctgaagtgctc |
118 |
Q |
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||||| |||||||||||||||||||| | ||||||||||| ||||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
49514578 |
gtgctgacctgctcatcagtaaattttcgactcaaggtccttttgcgaaagggatcatcatcctcccaatcaaaatcaactttactgtgctgaagtgctc |
49514479 |
T |
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| Q |
119 |
gaggaccgaaatctttgactacgtagtttgcaggtacctgagcattgataggagtcaaaatataccaattattatcatagagcataaataagcatat-ca |
217 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||| |||| |||||| ||||| |||||||||||||||| ||||||| ||||||| | || |
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| T |
49514478 |
gaggaccgaaatctttgactacgtagttcgtaggtacctgagtattggaaggagttaaaatcaaccaattattatcatacagcataactaagcatttaca |
49514379 |
T |
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| Q |
218 |
tgtgttatatacctcagtcacgacatcctcagactcctgtttgaactcccaaaagtcaggaataaaccttaaatc |
292 |
Q |
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|||| ||||||| ||||| |||||| || |||||| ||||| ||||||| ||||||||||||||||||||| |
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| T |
49514378 |
aatgttttatacctttgtcacaacatccataggctcctgcttgaattcccaaatgtcaggaataaaccttaaatc |
49514304 |
T |
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