View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13295_low_47 (Length: 295)

Name: NF13295_low_47
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13295_low_47
NF13295_low_47
[»] chr2 (11 HSPs)
chr2 (163-280)||(16657047-16657164)
chr2 (201-280)||(43625931-43626010)
chr2 (46-109)||(16656988-16657051)
chr2 (202-280)||(12235210-12235288)
chr2 (208-264)||(7542763-7542819)
chr2 (200-262)||(11999933-11999995)
chr2 (207-279)||(12258155-12258227)
chr2 (200-254)||(12244973-12245027)
chr2 (205-264)||(16661564-16661623)
chr2 (201-244)||(39373417-39373460)
chr2 (202-264)||(14703945-14704007)
[»] chr7 (16 HSPs)
chr7 (201-280)||(13333024-13333103)
chr7 (196-280)||(6790033-6790117)
chr7 (201-280)||(8585274-8585353)
chr7 (203-280)||(8629053-8629130)
chr7 (201-280)||(8654971-8655050)
chr7 (201-280)||(10493942-10494021)
chr7 (208-280)||(3147793-3147865)
chr7 (201-280)||(1301985-1302064)
chr7 (201-280)||(8647395-8647474)
chr7 (201-280)||(8667940-8668019)
chr7 (203-280)||(8659884-8659961)
chr7 (207-280)||(17268460-17268533)
chr7 (220-280)||(8671217-8671277)
chr7 (208-280)||(27830450-27830522)
chr7 (196-277)||(8588034-8588115)
chr7 (227-280)||(17260762-17260815)
[»] chr4 (3 HSPs)
chr4 (201-264)||(35132983-35133046)
chr4 (201-280)||(30775773-30775852)
chr4 (196-280)||(9335454-9335538)
[»] chr1 (4 HSPs)
chr1 (189-280)||(15595557-15595649)
chr1 (201-279)||(4678126-4678204)
chr1 (211-264)||(52549098-52549151)
chr1 (202-280)||(34466362-34466440)
[»] chr5 (2 HSPs)
chr5 (201-280)||(28220472-28220551)
chr5 (219-280)||(42555530-42555591)
[»] chr8 (1 HSPs)
chr8 (201-264)||(43745384-43745447)
[»] chr6 (1 HSPs)
chr6 (207-258)||(28911125-28911176)


Alignment Details
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 163 - 280
Target Start/End: Original strand, 16657047 - 16657164
Alignment:
Q  163 atgatacgattttactattattattgttattgttgttgttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgat 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16657047 atgatacgattttactattattattgttattgttgttgttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgat 16657146  T
Q  263 atcatcttgtggccattc 280  Q
    ||||||||||||||||||    
T  16657147 atcatcttgtggccattc 16657164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 43626010 - 43625931
Alignment:
Q  201 ttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  43626010 tttttccagatgctaagaggttaatcggtaggaagtttagtgattctgttgttcaaaatgatatcatgttgtggccattc 43625931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 16656988 - 16657051
Alignment:
Q  46 ttgttattattatagttaatattattattacagctttaaatagcggttgtagtcatgtcatgat 109  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16656988 ttgttattattatagttaatattattattacggctttaaatagcggttgtagtcatgtcatgat 16657051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 12235288 - 12235210
Alignment:
Q  202 tttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    ||||||||||||||| |||||||| |||||||||||||||||||  ||||||||| ||||| | || ||||||||||||    
T  12235288 tttttcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatgtgatgttgtggccattc 12235210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 7542819 - 7542763
Alignment:
Q  208 agatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatat 264  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||    
T  7542819 agatgctaagaggttaattggtaggaagtttagtgatcctgttgttcaagatgatat 7542763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 11999995 - 11999933
Alignment:
Q  200 gttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgat 262  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||||| |||||||||| |||||    
T  11999995 gttttttcagatgctaagaggttaattggttggaagtttagtgatcttgttgttcaagatgat 11999933  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 12258155 - 12258227
Alignment:
Q  207 cagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccatt 279  Q
    |||||||||| |||||||| |||||||||||||||||||  || |||||| ||||||| || |||||||||||    
T  12258155 cagatgctaagaggttaattggtaggaagtttagtgatcaagtagttcaagatgatataatgttgtggccatt 12258227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 12244973 - 12245027
Alignment:
Q  200 gttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttc 254  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||||| ||||||    
T  12244973 gttttttcagatgctaagagattaattggtaggaagtttagtgatcctattgttc 12245027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 16661564 - 16661623
Alignment:
Q  205 ttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatat 264  Q
    |||||||||||| |||||||| |||||||| |||||||| || ||||||||||| |||||    
T  16661564 ttcagatgctaagaggttaattggtaggaaatttagtgaccccgttgttcaaaaagatat 16661623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 39373460 - 39373417
Alignment:
Q  201 ttttttcagatgctaaaaggttaatcggtaggaagtttagtgat 244  Q
    |||||||||||||||| |||||||| ||||||||||||| ||||    
T  39373460 ttttttcagatgctaagaggttaattggtaggaagtttaatgat 39373417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 14704007 - 14703945
Alignment:
Q  202 tttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatat 264  Q
    ||||||||||||||| |||||  | || ||||||||||| |||||| |||||||| |||||||    
T  14704007 tttttcagatgctaagaggttgttgggaaggaagtttagcgatcctattgttcaagatgatat 14703945  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 280
Target Start/End: Original strand, 13333024 - 13333103
Alignment:
Q  201 ttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    |||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||||||    
T  13333024 ttttttcagatgctaagaggttaattggtaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattc 13333103  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 196 - 280
Target Start/End: Complemental strand, 6790117 - 6790033
Alignment:
Q  196 tgttgttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||| || || |||||||||    
T  6790117 tgttattttttcagatgctaagaggttaattggtaggaagtttagtgattctgttgttcaaaatgatatgatgttttggccattc 6790033  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 201 - 280
Target Start/End: Original strand, 8585274 - 8585353
Alignment:
Q  201 ttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    ||||||||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||||||    
T  8585274 ttttttcagatgccaagaggttaattggtaggaagtttagtgatcccgttgttcaaaatgatataatgttgtggccattc 8585353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 8629130 - 8629053
Alignment:
Q  203 ttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    ||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||    
T  8629130 ttttcagatgccaagaggttaattggtaggaagtttagtgatcctgttgttcaaaaggatatcatgttctggccattc 8629053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 8655050 - 8654971
Alignment:
Q  201 ttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    |||||| ||||||||| |||||||| |||||||||| |||||||||| |||||||||| |||||||| ||||||||||||    
T  8655050 tttttttagatgctaagaggttaattggtaggaagtatagtgatcctattgttcaaaaggatatcatgttgtggccattc 8654971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 280
Target Start/End: Original strand, 10493942 - 10494021
Alignment:
Q  201 ttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    |||||| ||||||||| |||||||| || ||||||||||||||||| ||||||||||| ||||| || ||||||||||||    
T  10493942 tttttttagatgctaagaggttaattggcaggaagtttagtgatccggttgttcaaaacgatataatgttgtggccattc 10494021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 3147865 - 3147793
Alignment:
Q  208 agatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    |||||| || |||||||| |||||||||||| ||||| ||||||||||||||||||| || ||||||||||||    
T  3147865 agatgcaaagaggttaattggtaggaagtttggtgattctgttgttcaaaatgatatgatgttgtggccattc 3147793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 1302064 - 1301985
Alignment:
Q  201 ttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    |||||||||||||||| || ||||| |||||||||||||||||| | ||||||||||| || || || ||||||||||||    
T  1302064 ttttttcagatgctaagagattaattggtaggaagtttagtgattcagttgttcaaaaagacatgatgttgtggccattc 1301985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 8647474 - 8647395
Alignment:
Q  201 ttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    ||||| |||||||||| |||||||||||||||||||||  |||| |||||||||| |||||||  |  ||||||||||||    
T  8647474 tttttccagatgctaagaggttaatcggtaggaagttttttgattctgttgttcagaatgataagaagttgtggccattc 8647395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 8668019 - 8667940
Alignment:
Q  201 ttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    ||||| |||||||||| |||||||| ||||||||||||||||| || ||||||||||  |||||  | ||||||||||||    
T  8668019 tttttgcagatgctaagaggttaattggtaggaagtttagtgaccccgttgttcaaagagatatattgttgtggccattc 8667940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 8659961 - 8659884
Alignment:
Q  203 ttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    ||||||||||| || || ||||| |||||||||||||||||| | ||||||||||| || || || ||||||||||||    
T  8659961 ttttcagatgcaaagagattaattggtaggaagtttagtgattcagttgttcaaaaagacatgatgttgtggccattc 8659884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 280
Target Start/End: Complemental strand, 17268533 - 17268460
Alignment:
Q  207 cagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    |||||||||| ||  |||| ||||||||||||||||||||||| || ||||| ||||| || | ||||||||||    
T  17268533 cagatgctaagagactaattggtaggaagtttagtgatcctgtggtccaaaaagatataatgtcgtggccattc 17268460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 8671217 - 8671277
Alignment:
Q  220 gttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    |||||| |||||||||||||||||||| ||||||||||  |||||  | ||||||||||||    
T  8671217 gttaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattc 8671277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 27830450 - 27830522
Alignment:
Q  208 agatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    ||||||||| |||||||| ||||||||||| || |||  |||||||||||| ||||| | |||||||| ||||    
T  27830450 agatgctaagaggttaattggtaggaagttcagcgatgatgttgttcaaaaagatataaacttgtggctattc 27830522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 277
Target Start/End: Complemental strand, 8588115 - 8588034
Alignment:
Q  196 tgttgttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggcca 277  Q
    ||||| |||||||||||| || |||||  || || ||||||||||| || |  |||||||||||||||| || |||||||||    
T  8588115 tgttgctttttcagatgcaaagaggttggtctgtgggaagtttagttattccattgttcaaaatgatatgatgttgtggcca 8588034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 17260815 - 17260762
Alignment:
Q  227 ggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    ||||||||||||||||||||||| || ||||| ||||| || | ||||||||||    
T  17260815 ggtaggaagtttagtgatcctgtggtccaaaaagatataatgtcgtggccattc 17260762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 35133046 - 35132983
Alignment:
Q  201 ttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatat 264  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||    
T  35133046 ttttttcagatgctaaaaggttaattggtaggaagtttagtgatcctattgttcaagatgatat 35132983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 30775852 - 30775773
Alignment:
Q  201 ttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    ||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||| |||||  | ||||||||||||    
T  30775852 ttttttcagatgctaaaaggttaattggtaggaaatttagcgaccctgttgttcaaaaagatattttgttgtggccattc 30775773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 280
Target Start/End: Original strand, 9335454 - 9335538
Alignment:
Q  196 tgttgttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    |||| ||||| |||||||||| || ||||  |||||||||||||||||||  ||||||||||  |||||  | ||||||||||||    
T  9335454 tgttatttttgcagatgctaagagattaactggtaggaagtttagtgatctggttgttcaaagagatatattgttgtggccattc 9335538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 280
Target Start/End: Complemental strand, 15595649 - 15595557
Alignment:
Q  189 ttattgttgttgttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctg-ttgttcaaaatgatatcatcttgtggccattc 280  Q
    ||||| ||||| |||||||||||||||| || |||||| ||||||||||||||||| ||| |||||||||||||||| |  ||||||||||||    
T  15595649 ttatttttgttattttttcagatgctaagagattaatcagtaggaagtttagtgattctgtttgttcaaaatgatataaagttgtggccattc 15595557  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 4678126 - 4678204
Alignment:
Q  201 ttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccatt 279  Q
    ||||| |||||||||| |||||||| ||||||| || ||||||| ||||||||||||| || ||||| |||||||||||    
T  4678126 tttttgcagatgctaagaggttaattggtaggaggtatagtgattctgttgttcaaaaagacatcatgttgtggccatt 4678204  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 52549098 - 52549151
Alignment:
Q  211 tgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatat 264  Q
    |||||| |||||||| |||| ||||||||||||||||||||||||| |||||||    
T  52549098 tgctaagaggttaattggtaagaagtttagtgatcctgttgttcaagatgatat 52549151  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 280
Target Start/End: Original strand, 34466362 - 34466440
Alignment:
Q  202 tttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    ||||||||||||||| |||||||| || || || ||||||||||||| ||||||||  ||||| || || |||||||||    
T  34466362 tttttcagatgctaagaggttaattggcagaaaatttagtgatcctgatgttcaaacagatatgatgttatggccattc 34466440  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 28220551 - 28220472
Alignment:
Q  201 ttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    |||||||||||||||| |||||||| |||||||||||||||||  ||||||||||| ||||||| |  ||||||||||||    
T  28220551 ttttttcagatgctaagaggttaattggtaggaagtttagtgactctgttgttcaagatgatataaagttgtggccattc 28220472  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 42555530 - 42555591
Alignment:
Q  219 ggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattc 280  Q
    ||||||| ||||||||||||| ||||  ||||||||||||||| || |  ||||||||||||    
T  42555530 ggttaattggtaggaagtttaatgattatgttgttcaaaatgacatgaagttgtggccattc 42555591  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 43745447 - 43745384
Alignment:
Q  201 ttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatat 264  Q
    |||| ||||||||||| |||||||| ||||||||||||| |||| ||| |||||||||||||||    
T  43745447 ttttgtcagatgctaagaggttaattggtaggaagtttaatgattctgatgttcaaaatgatat 43745384  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 28911176 - 28911125
Alignment:
Q  207 cagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaa 258  Q
    |||||||||| ||| |||| | |||||||||||||||||| |||||||||||    
T  28911176 cagatgctaagaggataattgataggaagtttagtgatcccgttgttcaaaa 28911125  T

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