View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_low_49 (Length: 276)
Name: NF13295_low_49
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 43866308 - 43866189
Alignment:
| Q |
122 |
gctctgtattgtgaaaatacctatattcttctatagatttcgatcttcattgatcaatatgtgattaatttgttttcccctttcgatgttttcctatttg |
221 |
Q |
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| T |
43866308 |
gctctgtattgtgaaaatgcctatattcttctgtagatttcgatcttcattgatcaatatgtgattcatttgttttccccttacgatgttttcctattcg |
43866209 |
T |
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| Q |
222 |
agtatgtatattgttattgt |
241 |
Q |
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| T |
43866208 |
aatatgtacattgtaattgt |
43866189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 43862667 - 43862565
Alignment:
| Q |
125 |
ctgtattgtgaaaatacctatattcttctatagatttcgatcttcattgatcaatatgtgattaatttgttttcccctttcgatgttttcctatttgagt |
224 |
Q |
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||||| |||| |||||||||||||| |||| |||||| |||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||||||| |
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| T |
43862667 |
ctgtaatgtggaaatacctatattcatcta--gatttcaatcttcattgatcaatatgtgattcatttgtttccccctttggatattttcctatttgagt |
43862570 |
T |
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| Q |
225 |
atgta |
229 |
Q |
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||||| |
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| T |
43862569 |
atgta |
43862565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 43872683 - 43872573
Alignment:
| Q |
126 |
tgtattgtgaaaatacctatattcttctatagatttcgatcttcattgatcaatatgtgattaatttgttttcccctttcgatgttttcctatttgagta |
225 |
Q |
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||||||||| |||||||||||||| | || |||||| |||||||||||||||| |||||| |||||||| ||||||| |||||||| ||||||||||| |
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| T |
43872683 |
tgtattgtggaaatacctatattcattta--gatttcaatcttcattgatcaat--gtgattcatttgtttccccctttggatgtttttctatttgagta |
43872588 |
T |
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| Q |
226 |
tgtatattgttattg |
240 |
Q |
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| T |
43872587 |
tgtacattgtaattg |
43872573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 15715780 - 15715744
Alignment:
| Q |
4 |
accacacatcatgagtctccaaaatatgctacgccaa |
40 |
Q |
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|||||| || ||||||||||||||||||||||||||| |
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| T |
15715780 |
accacaaattatgagtctccaaaatatgctacgccaa |
15715744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 30776169 - 30776133
Alignment:
| Q |
4 |
accacacatcatgagtctccaaaatatgctacgccaa |
40 |
Q |
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|||||| || ||||||||||||||||||||||||||| |
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| T |
30776169 |
accacaaattatgagtctccaaaatatgctacgccaa |
30776133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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