View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_low_5 (Length: 702)
Name: NF13295_low_5
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 11 - 686
Target Start/End: Original strand, 18219681 - 18220356
Alignment:
| Q |
11 |
agaatatcacaaagcaatcattagcatcattattttattgtattctgatgaaggtaggtagcataatgattttgcaatgaaaacattcaatcaatgagca |
110 |
Q |
| |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18219681 |
agaatattacaacgcaatcattagcatcattattttattgtattctgatgaaggtaggtagcataattattttgcaatgaaaacattcaatcaatgagca |
18219780 |
T |
|
| Q |
111 |
ctcaatagaataaagagtttatatatgttacctccatgccattcaatgccaaagaaatttcttttagctgttcttcaattttagcctttttatgaaccag |
210 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18219781 |
ctcaataaaataaagagtttatatatgttacctccatgccattcaatgccaaagaaatttcttttagctgttcttcaattttagcctttttatgaaccag |
18219880 |
T |
|
| Q |
211 |
ctccaaataaatatcctgcaattcaacagataaaatcattattaaaagctactgttgtctatatgttatttgacctcccaaattcccagtcccaacttta |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
18219881 |
ctccaaataaatatcctgcaattcaacagataaaatcattattaaaagctactgttgtctatatgtcatgtgacctcccaaattcccagtcccaacttta |
18219980 |
T |
|
| Q |
311 |
ctattcatgttaaccgttagcaatgagctggtactactatgcttcctctcacctgcttagaaacctgggaaccatggtcctcaaaattcaaacttgacat |
410 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
18219981 |
ctattcatgttaaccgttagcaatgagctggtactactatgcttcctctcacctgcttagaaacctgggaaccatagtcctcaaaattcaaacttgacat |
18220080 |
T |
|
| Q |
411 |
acaagaactaggagtagtcacaagagccaatgcttcctcttctctttttgatgtgagctccctcatttctctgtttgcagatcaagaaaagtaagcaata |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18220081 |
acaagaactaggagtagtcacaagagccaatgcttcctcttctctttttgatgtgagctccctcatttctctgtttgcagatcaagaaaagtaagcaata |
18220180 |
T |
|
| Q |
511 |
actcaatcaatagaataaccaataacactggtcattcgatcatnnnnnnnnnnnnnnnnntgaaattggcaataccttttcaacttaattatttcctcct |
610 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18220181 |
actcaatcaatagaataaccaataacactggccattcaatcataaaaataaaataaaaaatgaaattggcaataccttttcaacttaattatttcctcct |
18220280 |
T |
|
| Q |
611 |
ttatctctctgagttcatgactcgtaacattttctggtgaaatgctgtcaccaggcttccaaccagggggaggagt |
686 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18220281 |
ttatctctctgagttcatgactagtaacattttctggtgaaatgctgtcaccaggcttccaaccagggggaggagt |
18220356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 381
Target Start/End: Original strand, 43011507 - 43011873
Alignment:
| Q |
11 |
agaatatcacaaagcaatcattagcatcattattttattgtattctgatgaaggtaggtagcataatgattttgcaatgaaaacattcaatcaatgagca |
110 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||| ||||||||||| |||| |
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| T |
43011507 |
agaatatttcaaagcaatcatcagcatcattattttattgtattctgatgaatgtaggtagcataattattttgcattgaaaaaattcaatcaataagca |
43011606 |
T |
|
| Q |
111 |
-ctcaatagaataaagagtttatatatgttacctccatgccattcaatgccaaagaaatttcttttagctgttcttcaattttagcctttttatgaacca |
209 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43011607 |
gctcaataaaataaagagtttatatatgttacctccatgccattcaatgccaaagaaatttcttttagctgttcttcaattttagcctttttatgaacca |
43011706 |
T |
|
| Q |
210 |
gctccaaataaatatcctgcaattcaacagataaaatcattattaaaagctactgttgtctatatgttatttgacctcccaaattcccagtcccaacttt |
309 |
Q |
| |
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||||||||||||||||||| ||| |||||||| ||| |||||||||| ||||||||||||||||| || |||||||||||||||||||| ||| |
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| T |
43011707 |
gctccaaataaatatcctgaaatataacagatagaataattattaaaaactactgttgtctatatgacatgtgacctcccaaattcccagt-----tttt |
43011801 |
T |
|
| Q |
310 |
actattcatgttaaccgttagcaatgagctggtactactatgcttcctctcacctgcttagaaacctgggaa |
381 |
Q |
| |
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|||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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|
| T |
43011802 |
actattcatgttaattgttagcaatgagctgggactactatgcttcccctcacctgcttagaaacctgggaa |
43011873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 457 - 686
Target Start/End: Original strand, 43011907 - 43012135
Alignment:
| Q |
457 |
tttgatgtgagctccctcatttctctgtttgcagatcaagaaaagtaagcaataactcaa--tcaatagaataaccaataacactggtcattcgatcatn |
554 |
Q |
| |
|
|||||| | |||||||||||||| ||||||||||||||||||||||| | |||| |||| |||||||||||||||||||||| ||||||| ||||| |
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|
| T |
43011907 |
tttgattttagctccctcatttcactgtttgcagatcaagaaaagtatgtgataaatcaaaatcaatagaataaccaataacaccagtcattcaatcata |
43012006 |
T |
|
| Q |
555 |
nnnnnnnnnnnnnnnntgaaattggcaataccttttcaacttaattatttcctcctttat---ctctctgagttcatgactcgtaacattttctggtgaa |
651 |
Q |
| |
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||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |||||||| | |
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| T |
43012007 |
aaatggaaaa------tgaaactggcaataccgtttcaacttaattatttcctcctttatgatctctctgagttcattactagtaacatattctggtgca |
43012100 |
T |
|
| Q |
652 |
atgctgtcaccaggcttccaaccagggggaggagt |
686 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||| |
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|
| T |
43012101 |
atgctgtctccaggcttccagccagggggaggagt |
43012135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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