View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_low_54 (Length: 267)
Name: NF13295_low_54
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 39937323 - 39937566
Alignment:
| Q |
8 |
ggagtagtgatattgattttaatctaaactgtttaaatgnnnnnnngccatctgtcacacatcagttaagctaactaggaaactggacaaaatgctaact |
107 |
Q |
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| T |
39937323 |
ggagtaatgatattgattttaatctgaaccgtttaaatgtttttt-gccatctgtcacacatcagttaagctaactgggaaactggacaaaatgctaact |
39937421 |
T |
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| Q |
108 |
ggagcagatccgaactcgttgttgacggttgataattgcgagttaattgattgattcgatgaaaaataatggatatttatttggtctcacccagaacaca |
207 |
Q |
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| T |
39937422 |
ggagcagatccgaactcgttgttgacggttgataattgcgagttaattgattgattcgatgaaaattaatggatatttatttggtctcacccagaaaaca |
39937521 |
T |
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| Q |
208 |
aaaccaaacactatgcatattctcaagttggagaagatagacatg |
252 |
Q |
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| T |
39937522 |
aaaccaaacactatgcatattctcaagttggagaagatagacatg |
39937566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 19739054 - 19738931
Alignment:
| Q |
1 |
acgtgatggagtagtgatattgattttaatctaaactgtttaaatgnnnnnnngccatctgtcacacatcagttaagctaactaggaaactggacaaaat |
100 |
Q |
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| T |
19739054 |
acgtgagggagtagtgatattgattttaatctgaaccgtttaaatgtttttttgccaagtgtcacgcatcaattaagctaact-ggaaactggacaaaat |
19738956 |
T |
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| Q |
101 |
gctaactggagcagatccgaactcg |
125 |
Q |
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| T |
19738955 |
gctaactggagcagattcgaactcg |
19738931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 18543393 - 18543488
Alignment:
| Q |
157 |
attgattcgatgaaaaataatggatatttatttggtctcacccagaacacaaaaccaaacactatgcatattctcaagttggagaagatagacatg |
252 |
Q |
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| T |
18543393 |
attgatttgatgaaaattaatggatatttatttagtcttgcccttaaaacaaaaccacacaatatgcatattctcaagttggagaaaatagacatg |
18543488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 43078809 - 43078864
Alignment:
| Q |
61 |
gtcacacatcagttaagctaactaggaaactggacaaaatgctaactggagcagat |
116 |
Q |
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| T |
43078809 |
gtcacacatccgttaagctaacctggaaactggacaaaatactaactggagcagat |
43078864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 43078293 - 43078237
Alignment:
| Q |
60 |
tgtcacacatcagttaagctaactaggaaactggacaaaatgctaactggagcagatc |
117 |
Q |
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| T |
43078293 |
tgtcacacatccgttaagctaacg-ggaaactggacaaaataccaaccggagcagatc |
43078237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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