View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_low_56 (Length: 251)
Name: NF13295_low_56
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 33 - 225
Target Start/End: Original strand, 33865453 - 33865638
Alignment:
| Q |
33 |
tttcacctagctagctcataatttttcattt-aaaaaatgaaaggtttgagttgtttcaagataaacatgattttagtaatattgtttgtgcttgttcac |
131 |
Q |
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| T |
33865453 |
tttcatctagctagcaaataatttttcatttgaaaaaatgaaaggttctagtttttccaagataaacatgatatttgtaatattat----gcttcttcac |
33865548 |
T |
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| Q |
132 |
aaacttgaggatgggtttgggtgatatgaatggaatcggagagcagtcactttcaaagattgcctgccattcacaaaaccattctttctctcca |
225 |
Q |
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| T |
33865549 |
aaacttgaggatctgtttgggtgatatgaatggaattggagagcagccactttcaaagat----tgccattcacaaaaccattcttgctctcca |
33865638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 40 - 225
Target Start/End: Original strand, 33855101 - 33855279
Alignment:
| Q |
40 |
tagctagctcataatttttcattt-aaaaaatgaaaggtttgagttgtttcaagataaacatgattttagtaatattgtttgtgcttgttcacaaacttg |
138 |
Q |
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| T |
33855101 |
tagctagcaaataatttttcatttgaaaaaatgaaaggttctagtttttccaagataaacatgatatttgtaatattat----gcttcttcacaaacttg |
33855196 |
T |
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| Q |
139 |
aggatgggtttgggtgatatgaatggaatcggagagcagtcactttcaaagattgcctgccattcacaaaaccattctttctctcca |
225 |
Q |
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| T |
33855197 |
aggatctgtttgggtgatatgaatggaattggagagcagccactttcaaagat----tgccattcacaaaaccattcttgctctcca |
33855279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 33854295 - 33854352
Alignment:
| Q |
1 |
tgagtggagtgtgaagtagagaaaacttttgttttcacctagctagctcataattttt |
58 |
Q |
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| T |
33854295 |
tgagtggagtgtgaagtagagaaaacttttgttttcacctagctagctcataattttt |
33854352 |
T |
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