View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13295_low_59 (Length: 249)

Name: NF13295_low_59
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13295_low_59
NF13295_low_59
[»] chr7 (25 HSPs)
chr7 (1-238)||(37307879-37308103)
chr7 (184-227)||(9819565-9819608)
chr7 (184-227)||(10721490-10721533)
chr7 (184-225)||(29734808-29734849)
chr7 (184-227)||(1285085-1285128)
chr7 (184-227)||(3948056-3948099)
chr7 (188-227)||(4398332-4398371)
chr7 (188-227)||(8683076-8683115)
chr7 (184-227)||(22267583-22267626)
chr7 (184-227)||(25246773-25246816)
chr7 (184-226)||(3196659-3196701)
chr7 (183-225)||(8663295-8663337)
chr7 (188-226)||(9522918-9522956)
chr7 (185-227)||(10555359-10555401)
chr7 (188-226)||(39280835-39280873)
chr7 (188-226)||(42435415-42435453)
chr7 (184-226)||(44558791-44558833)
chr7 (189-226)||(29237574-29237611)
chr7 (184-221)||(31037665-31037702)
chr7 (188-221)||(36803844-36803877)
chr7 (185-226)||(46823035-46823076)
chr7 (188-224)||(4346667-4346703)
chr7 (186-226)||(16577877-16577917)
chr7 (186-226)||(16587745-16587785)
chr7 (184-224)||(29461840-29461880)
[»] chr3 (31 HSPs)
chr3 (188-226)||(33223874-33223912)
chr3 (188-226)||(7232201-7232239)
chr3 (185-226)||(2662095-2662136)
chr3 (185-226)||(39100101-39100142)
chr3 (188-227)||(39216357-39216396)
chr3 (192-226)||(2078250-2078284)
chr3 (192-226)||(3176990-3177024)
chr3 (184-226)||(3755341-3755383)
chr3 (184-226)||(5428453-5428495)
chr3 (188-226)||(6901471-6901509)
chr3 (184-226)||(7202933-7202975)
chr3 (188-226)||(13800673-13800711)
chr3 (188-226)||(18870742-18870780)
chr3 (184-226)||(43345024-43345066)
chr3 (188-226)||(43490434-43490472)
chr3 (188-226)||(45431954-45431992)
chr3 (188-226)||(50570206-50570244)
chr3 (184-226)||(54230116-54230158)
chr3 (192-225)||(1757687-1757720)
chr3 (188-225)||(7868728-7868765)
chr3 (185-226)||(8174273-8174314)
chr3 (193-226)||(10440695-10440728)
chr3 (188-225)||(35492799-35492836)
chr3 (185-226)||(35548305-35548346)
chr3 (188-237)||(38869524-38869573)
chr3 (185-222)||(53852738-53852775)
chr3 (184-224)||(15005946-15005986)
chr3 (188-227)||(24120436-24120476)
chr3 (185-225)||(47185822-47185862)
chr3 (193-225)||(48022332-48022364)
chr3 (190-226)||(48511258-48511294)
[»] chr2 (27 HSPs)
chr2 (184-226)||(18782557-18782599)
chr2 (184-226)||(3197096-3197138)
chr2 (188-226)||(7206131-7206169)
chr2 (188-226)||(22608533-22608571)
chr2 (188-227)||(7029407-7029446)
chr2 (184-227)||(28771584-28771627)
chr2 (184-227)||(30762511-30762554)
chr2 (188-223)||(37984361-37984396)
chr2 (188-222)||(8727727-8727761)
chr2 (184-226)||(12124547-12124589)
chr2 (184-226)||(16221363-16221405)
chr2 (184-222)||(20517024-20517062)
chr2 (188-226)||(20565092-20565130)
chr2 (188-226)||(24592863-24592901)
chr2 (192-226)||(25395459-25395493)
chr2 (188-226)||(26999116-26999154)
chr2 (185-227)||(29133500-29133542)
chr2 (184-226)||(29896311-29896353)
chr2 (188-226)||(30243256-30243294)
chr2 (184-226)||(34464426-34464468)
chr2 (184-226)||(35685078-35685120)
chr2 (184-226)||(43117207-43117249)
chr2 (184-225)||(690790-690831)
chr2 (184-225)||(13490727-13490768)
chr2 (193-222)||(30799109-30799138)
chr2 (188-225)||(35451261-35451298)
chr2 (188-225)||(41668661-41668698)
[»] chr8 (25 HSPs)
chr8 (185-226)||(40919376-40919417)
chr8 (188-226)||(37015853-37015891)
chr8 (183-222)||(1230682-1230721)
chr8 (188-227)||(13286137-13286176)
chr8 (184-226)||(7553681-7553723)
chr8 (184-226)||(8717492-8717534)
chr8 (188-226)||(11708992-11709030)
chr8 (184-226)||(12714387-12714429)
chr8 (184-226)||(13575291-13575333)
chr8 (188-226)||(20469328-20469366)
chr8 (184-226)||(29652220-29652262)
chr8 (188-226)||(33445576-33445614)
chr8 (188-226)||(36018547-36018585)
chr8 (188-226)||(39821890-39821928)
chr8 (188-226)||(44019555-44019593)
chr8 (185-226)||(444127-444168)
chr8 (187-220)||(15167055-15167088)
chr8 (189-226)||(29908018-29908055)
chr8 (193-226)||(31336824-31336857)
chr8 (184-225)||(37750017-37750058)
chr8 (184-224)||(1243760-1243800)
chr8 (184-224)||(1254460-1254500)
chr8 (187-227)||(3757973-3758013)
chr8 (193-225)||(33996080-33996112)
chr8 (193-225)||(35700413-35700445)
[»] chr4 (30 HSPs)
chr4 (192-227)||(45970723-45970758)
chr4 (188-226)||(21317355-21317393)
chr4 (185-226)||(2649750-2649791)
chr4 (188-227)||(8494993-8495032)
chr4 (184-227)||(12671764-12671807)
chr4 (188-227)||(23154600-23154639)
chr4 (184-227)||(38812865-38812908)
chr4 (184-226)||(3299111-3299153)
chr4 (188-226)||(3936633-3936671)
chr4 (188-226)||(11286798-11286836)
chr4 (192-226)||(17423194-17423228)
chr4 (184-218)||(18458754-18458788)
chr4 (188-226)||(20403185-20403223)
chr4 (188-226)||(20799411-20799449)
chr4 (184-222)||(22164290-22164328)
chr4 (188-226)||(27655737-27655775)
chr4 (184-226)||(28031814-28031856)
chr4 (184-226)||(28435265-28435307)
chr4 (184-226)||(34247442-34247484)
chr4 (192-226)||(41520964-41520998)
chr4 (188-226)||(50362156-50362194)
chr4 (188-222)||(54500575-54500609)
chr4 (184-226)||(55430598-55430640)
chr4 (184-225)||(14577525-14577566)
chr4 (185-226)||(16304115-16304156)
chr4 (188-225)||(42198594-42198631)
chr4 (193-225)||(19997382-19997414)
chr4 (188-228)||(22279535-22279575)
chr4 (188-224)||(39669515-39669551)
chr4 (184-224)||(50376674-50376714)
[»] chr1 (42 HSPs)
chr1 (184-227)||(11014234-11014277)
chr1 (184-238)||(14905421-14905475)
chr1 (184-226)||(16533050-16533092)
chr1 (184-222)||(44243875-44243913)
chr1 (184-226)||(47961306-47961348)
chr1 (190-226)||(37045163-37045199)
chr1 (188-224)||(50533077-50533113)
chr1 (188-227)||(23171313-23171352)
chr1 (184-226)||(3393585-3393627)
chr1 (184-222)||(3528490-3528528)
chr1 (188-226)||(5503782-5503820)
chr1 (188-222)||(7925370-7925404)
chr1 (188-226)||(13234084-13234122)
chr1 (188-226)||(21400040-21400078)
chr1 (184-226)||(28032286-28032328)
chr1 (184-226)||(29233991-29234033)
chr1 (184-226)||(30561725-30561767)
chr1 (188-226)||(30795707-30795745)
chr1 (192-226)||(32497498-32497532)
chr1 (192-226)||(32950778-32950812)
chr1 (184-226)||(34521207-34521249)
chr1 (188-238)||(34632175-34632225)
chr1 (188-222)||(36371061-36371095)
chr1 (188-226)||(48681950-48681988)
chr1 (188-226)||(52441528-52441566)
chr1 (188-221)||(14393-14426)
chr1 (185-226)||(1864236-1864277)
chr1 (184-225)||(3431332-3431373)
chr1 (193-226)||(12269001-12269034)
chr1 (189-226)||(13775628-13775665)
chr1 (188-225)||(18166608-18166645)
chr1 (184-225)||(24695561-24695602)
chr1 (182-227)||(29741950-29741995)
chr1 (184-221)||(40214701-40214738)
chr1 (192-224)||(5291107-5291139)
chr1 (187-227)||(25365012-25365052)
chr1 (193-225)||(28455371-28455403)
chr1 (184-232)||(29441892-29441940)
chr1 (193-225)||(32864303-32864335)
chr1 (192-224)||(33229701-33229733)
chr1 (185-221)||(39916957-39916993)
chr1 (184-228)||(40618912-40618956)
[»] chr6 (19 HSPs)
chr6 (184-226)||(30639443-30639485)
chr6 (184-226)||(32193876-32193918)
chr6 (192-226)||(331903-331937)
chr6 (184-226)||(866302-866344)
chr6 (184-226)||(1918475-1918517)
chr6 (184-222)||(2105907-2105945)
chr6 (184-238)||(8809308-8809362)
chr6 (188-226)||(10780124-10780162)
chr6 (184-226)||(21936050-21936092)
chr6 (184-226)||(24373727-24373769)
chr6 (188-226)||(32149144-32149182)
chr6 (188-226)||(33938696-33938734)
chr6 (188-226)||(34701153-34701191)
chr6 (184-225)||(12028-12069)
chr6 (188-225)||(12276249-12276286)
chr6 (184-221)||(29457183-29457220)
chr6 (197-225)||(20129003-20129031)
chr6 (197-225)||(22203839-22203867)
chr6 (186-226)||(26587396-26587436)
[»] chr5 (31 HSPs)
chr5 (189-227)||(1642341-1642379)
chr5 (184-226)||(18489093-18489135)
chr5 (184-226)||(18538610-18538652)
chr5 (184-225)||(17861981-17862022)
chr5 (188-225)||(27721693-27721730)
chr5 (185-225)||(10917333-10917373)
chr5 (193-224)||(13150872-13150903)
chr5 (184-227)||(20365488-20365531)
chr5 (188-226)||(6489013-6489051)
chr5 (184-226)||(11017178-11017220)
chr5 (184-226)||(13409430-13409472)
chr5 (188-226)||(15889417-15889455)
chr5 (184-226)||(18278276-18278318)
chr5 (188-226)||(18789042-18789080)
chr5 (193-227)||(20206526-20206560)
chr5 (184-226)||(27903115-27903157)
chr5 (188-226)||(29962364-29962402)
chr5 (188-226)||(30012396-30012434)
chr5 (188-226)||(31591554-31591592)
chr5 (188-226)||(31602842-31602880)
chr5 (184-226)||(34206229-34206271)
chr5 (188-226)||(34436857-34436895)
chr5 (188-226)||(37614444-37614482)
chr5 (188-226)||(37791180-37791218)
chr5 (188-225)||(1669598-1669635)
chr5 (188-225)||(5485192-5485229)
chr5 (188-225)||(19248485-19248522)
chr5 (184-221)||(37054291-37054328)
chr5 (193-221)||(11666014-11666042)
chr5 (197-225)||(39431143-39431171)
chr5 (184-224)||(41083562-41083602)
[»] scaffold0122 (2 HSPs)
scaffold0122 (183-227)||(31171-31215)
scaffold0122 (184-226)||(14203-14245)
[»] scaffold1320 (1 HSPs)
scaffold1320 (187-220)||(1782-1815)
[»] scaffold0005 (1 HSPs)
scaffold0005 (184-225)||(239809-239850)
[»] scaffold0072 (1 HSPs)
scaffold0072 (188-224)||(25701-25737)


Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 37308103 - 37307879
Alignment:
Q  1 tgaatgacggaaaaaagttctttacacattatacacctttgaaacatattttcacaccggaaagaagtatgagccgccacatatctggcagtgtaaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  37308103 tgaatgacggaaaaaagttctttacacattatacaccttttaaacatattttcacaccggaaagaagtatgagccgccacatatctggcagtgta----- 37308009  T
Q  101 tgccaacacttcaaatttatttaagtttggctctttgcggtttgaaattcatttatttaattaaacaaatttatctaatcatcgagtttagctcagttgg 200  Q
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37308008 --------cttcaaatttatttaagtttggctctttgcggtttgaaattcatttatttaattaaacaaatttatctaatcatcgagtttagctcagttga 37307917  T
Q  201 tagaaacaatgcataatatatgcaagacccgatgttca 238  Q
    ||| ||||||||||||||||||||||| ||||||||||    
T  37307916 taggaacaatgcataatatatgcaagatccgatgttca 37307879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 9819608 - 9819565
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||||| |||||||||||| |||||||||||||||||||||||    
T  9819608 gagtttatctcagttggtaggaacaatgcataatatatgcaaga 9819565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 10721533 - 10721490
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||||| |||||||||||| |||||||||||||||||||||||    
T  10721533 gagtttatctcagttggtaggaacaatgcataatatatgcaaga 10721490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 29734849 - 29734808
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||||| | |||||||||||||||||||||||||    
T  29734849 gagtttagctcagtcgatagaaacaatgcataatatatgcaa 29734808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 1285128 - 1285085
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||||| |||||||| ||| |||||||||||||||||||||||    
T  1285128 gagtttaactcagttgataggaacaatgcataatatatgcaaga 1285085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 3948056 - 3948099
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||||| |||||||| |||| ||||||||||||||||||||||    
T  3948056 gagtttaactcagttgatagagacaatgcataatatatgcaaga 3948099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 4398332 - 4398371
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  4398332 ttagctcagttggtaagaacaatgcataatatatgcaaga 4398371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 8683076 - 8683115
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  8683076 ttagctcagttggtatagacaatgcataatatatgcaaga 8683115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 22267583 - 22267626
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||||    
T  22267583 gagtttaactcagttggtagagacaatgcataatatatgtaaga 22267626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 25246773 - 25246816
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    |||||||||||||||| || | ||||||||||||||||||||||    
T  25246773 gagtttagctcagttgataaagacaatgcataatatatgcaaga 25246816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 3196701 - 3196659
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||||| | |||||| ||||||||||||||    
T  3196701 gagtttagctcagttggtaaagacaatgtataatatatgcaag 3196659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 8663295 - 8663337
Alignment:
Q  183 cgagtttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||| |||||||||||||||| || ||||||||||||||||||    
T  8663295 cgagcttagctcagttggtagcaagaatgcataatatatgcaa 8663337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 9522918 - 9522956
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  9522918 ttagctcagttggtatgaacaatgcataatatatgcaag 9522956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 10555401 - 10555359
Alignment:
Q  185 agtttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||||||||||||||||  ||||||| |||||||||||||||    
T  10555401 agtttagctcagttggtatgaacaatgtataatatatgcaaga 10555359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 39280873 - 39280835
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  39280873 ttagctcagttggtaagaacaatgcataatatatgcaag 39280835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 42435453 - 42435415
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  42435453 ttagctcagttggtagagactatgcataatatatgcaag 42435415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 44558833 - 44558791
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  44558833 gagtttagctcagttggtatggacaatgcataatatatgcaag 44558791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 29237611 - 29237574
Alignment:
Q  189 tagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  29237611 tagctcagttggtaagaacaatgcataatatatgcaag 29237574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 31037702 - 31037665
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatat 221  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  31037702 gagtttaactcagttggtaggaacaatgcataatatat 31037665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 36803844 - 36803877
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatat 221  Q
    ||||||||||||||||| ||||||||||||||||    
T  36803844 ttagctcagttggtagagacaatgcataatatat 36803877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 46823035 - 46823076
Alignment:
Q  185 agtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||| |||||| | ||||||||||||||||||||    
T  46823035 agtttagctcagctggtaggagcaatgcataatatatgcaag 46823076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 4346667 - 4346703
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgca 224  Q
    ||||||||||||||||  |||||||||||||||||||    
T  4346667 ttagctcagttggtagggacaatgcataatatatgca 4346703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 16577917 - 16577877
Alignment:
Q  186 gtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||||  ||||| |||||||||||||||    
T  16577917 gtttagctcagttggtagggacaatacataatatatgcaag 16577877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 16587745 - 16587785
Alignment:
Q  186 gtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||||  ||||| |||||||||||||||    
T  16587745 gtttagctcagttggtagggacaatacataatatatgcaag 16587785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 29461880 - 29461840
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgca 224  Q
    ||||||| ||||||||||||  |||||||||||||||||||    
T  29461880 gagtttaactcagttggtagggacaatgcataatatatgca 29461840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 33223874 - 33223912
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33223874 ttagctcagttggtagaaacaatgcataatatatgcaag 33223912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 7232239 - 7232201
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  7232239 ttaggtcagttggtagaaacaatgcataatatatgcaag 7232201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 2662095 - 2662136
Alignment:
Q  185 agtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||| | |||||||||||||||||||||    
T  2662095 agtttagctcagttggtaaagacaatgcataatatatgcaag 2662136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 39100142 - 39100101
Alignment:
Q  185 agtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  39100142 agtttagctcagttgttataaacaatgcataatatatgcaag 39100101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 39216357 - 39216396
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  39216357 ttagctcagttggtagagaaaatgcataatatatgcaaga 39216396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 2078250 - 2078284
Alignment:
Q  192 ctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||| |||||||||||||||||||||    
T  2078250 ctcagttggtagagacaatgcataatatatgcaag 2078284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 3177024 - 3176990
Alignment:
Q  192 ctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||| ||||||||||||||||||||||    
T  3177024 ctcagttggtaggaacaatgcataatatatgcaag 3176990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 3755341 - 3755383
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||| ||||||||  |||||||||||||||||||||    
T  3755341 gagtttagctcggttggtagggacaatgcataatatatgcaag 3755383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 5428495 - 5428453
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||| ||| || |||||||||||||||||||||||    
T  5428495 gagtttagctcaattgataaaaacaatgcataatatatgcaag 5428453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 6901509 - 6901471
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  6901509 ttagctcagttggtaggaacaatgtataatatatgcaag 6901471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 7202975 - 7202933
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||| | |||||||||||| |||||||||    
T  7202975 gagtttagctcagttggttggaacaatgcataaaatatgcaag 7202933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 13800673 - 13800711
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  13800673 ttagctcagttggtaagaacaatgcataatatatgcaag 13800711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 18870780 - 18870742
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  18870780 ttagctcagttggtagggacaatgcataatatatgcaag 18870742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 43345066 - 43345024
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||||  |||||| |||||||||||||||    
T  43345066 gagtttagctcagttggtatgaacaatacataatatatgcaag 43345024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 43490472 - 43490434
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  43490472 ttagctcagttggtatgaacaatgcataatatatgcaag 43490434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 45431954 - 45431992
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  45431954 ttagctcagttggtagggacaatgcataatatatgcaag 45431992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 50570244 - 50570206
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  50570244 ttagctcagttggtatagacaatgcataatatatgcaag 50570206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 54230158 - 54230116
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  54230158 gagtttagctcagttggtaaggacaatgcataatatatgcaag 54230116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 1757720 - 1757687
Alignment:
Q  192 ctcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||| |||||||||||||||||||||    
T  1757720 ctcagttggtaggaacaatgcataatatatgcaa 1757687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 7868728 - 7868765
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||||||  |||||||||||||||||||||    
T  7868728 ttagctcagttggtaagaacaatgcataatatatgcaa 7868765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 8174273 - 8174314
Alignment:
Q  185 agtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||||| |||||  ||||||||||||||    
T  8174273 agtttagctcagttggtagagacaatatataatatatgcaag 8174314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 10440695 - 10440728
Alignment:
Q  193 tcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||| |||||||||||||||||||||    
T  10440695 tcagttggtagagacaatgcataatatatgcaag 10440728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 35492799 - 35492836
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||||||  |||||||||||||||||||||    
T  35492799 ttagctcagttggtaagaacaatgcataatatatgcaa 35492836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 35548346 - 35548305
Alignment:
Q  185 agtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||||  ||||||| ||||||||||||||    
T  35548346 agtttagctcagttggtatgaacaatgtataatatatgcaag 35548305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 38869573 - 38869524
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaagacccgatgttc 237  Q
    |||||||||||||||  ||||||||||||||||| ||||| |||| ||||    
T  38869573 ttagctcagttggtaagaacaatgcataatatatacaagatccgaggttc 38869524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 53852738 - 53852775
Alignment:
Q  185 agtttagctcagttggtagaaacaatgcataatatatg 222  Q
    |||||||||||||||| | |||||||||||||||||||    
T  53852738 agtttagctcagttggcataaacaatgcataatatatg 53852775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 15005946 - 15005986
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgca 224  Q
    ||||||||||||||||| ||||||| |||||||| ||||||    
T  15005946 gagtttagctcagttggcagaaacattgcataatttatgca 15005986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 24120476 - 24120436
Alignment:
Q  188 ttagctcagttggtagaaacaa-tgcataatatatgcaaga 227  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  24120476 ttagctcagttggtagagacaaatgcataatatatgcaaga 24120436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 47185862 - 47185822
Alignment:
Q  185 agtttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||||||||| | ||||||||||| ||||||||    
T  47185862 agtttagctcagttggtaaagacaatgcataaaatatgcaa 47185822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 48022364 - 48022332
Alignment:
Q  193 tcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||| ||||||||||||||||||||    
T  48022364 tcagttggtagagacaatgcataatatatgcaa 48022332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 48511258 - 48511294
Alignment:
Q  190 agctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||  |||||||||||||||||||||    
T  48511258 agctcagttggtagggacaatgcataatatatgcaag 48511294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 18782599 - 18782557
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  18782599 gagtttagctaagttggtagaaacaatgcataatatatgcaag 18782557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 3197138 - 3197096
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  3197138 gagtttagctcagttggtagggacaatgcataatatatgcaag 3197096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 7206131 - 7206169
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  7206131 ttagctcagttggtagagacaatgcataatatatgcaag 7206169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 22608533 - 22608571
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  22608533 ttagctcagttggtagagacaatgcataatatatgcaag 22608571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 7029446 - 7029407
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  7029446 ttagctcagttggtaaaaacaatacataatatatgcaaga 7029407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 28771584 - 28771627
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    |||||||||||||||||||   ||||||||||||||||||||||    
T  28771584 gagtttagctcagttggtaaggacaatgcataatatatgcaaga 28771627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 30762554 - 30762511
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||    
T  30762554 gagtttagctcagttggtatagacaatgcataaaatatgcaaga 30762511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 223
Target Start/End: Original strand, 37984361 - 37984396
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgc 223  Q
    ||||||||||||||| ||||||||||||||||||||    
T  37984361 ttagctcagttggtataaacaatgcataatatatgc 37984396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Complemental strand, 8727761 - 8727727
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatg 222  Q
    ||||||||||| |||||||||||||||||||||||    
T  8727761 ttagctcagttagtagaaacaatgcataatatatg 8727727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 12124547 - 12124589
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  12124547 gagtttagctcagttggtaaggacaatgcataatatatgcaag 12124589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 16221405 - 16221363
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||||  |||||||||||| |||||||||    
T  16221405 gagtttagctcagttggtatgaacaatgcataaaatatgcaag 16221363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 20517024 - 20517062
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatg 222  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  20517024 gagtttagctcagttggtaagaacaatgcataatatatg 20517062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 20565130 - 20565092
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  20565130 ttagctcagttggtagggacaatgcataatatatgcaag 20565092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 24592901 - 24592863
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  24592901 ttagctcagttggtagggacaatgcataatatatgcaag 24592863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 25395493 - 25395459
Alignment:
Q  192 ctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||| ||||||||||||||||||||||    
T  25395493 ctcagttggtaggaacaatgcataatatatgcaag 25395459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 26999116 - 26999154
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  26999116 ttagttcagttggtagagacaatgcataatatatgcaag 26999154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 29133542 - 29133500
Alignment:
Q  185 agtttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||||||||||||||||  |||||||||||| ||||||||||    
T  29133542 agtttagctcagttggtatgaacaatgcataaaatatgcaaga 29133500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 29896353 - 29896311
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||  ||||||| ||||||||||||||||||||||||||    
T  29896353 gagtttaattcagttgatagaaacaatgcataatatatgcaag 29896311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 30243256 - 30243294
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  30243256 ttagctcagttggtagagacaatgcataatatatacaag 30243294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 34464468 - 34464426
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  34464468 gagtttagctcagttggtatggacaatgcataatatatgcaag 34464426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 35685120 - 35685078
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  35685120 gagtttagctcagttggtaaggacaatgcataatatatgcaag 35685078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 43117249 - 43117207
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  43117249 gagtttagctcagttggtaaggacaatgcataatatatgcaag 43117207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 690790 - 690831
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    ||||||||||||||||| ||| |||||| |||||||||||||    
T  690790 gagtttagctcagttggaagagacaatgtataatatatgcaa 690831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 13490727 - 13490768
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||||||| |||| |||||| |||||||||||||    
T  13490727 gagtttagctcagttgatagagacaatgtataatatatgcaa 13490768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 222
Target Start/End: Complemental strand, 30799138 - 30799109
Alignment:
Q  193 tcagttggtagaaacaatgcataatatatg 222  Q
    ||||||||||||||||||||||||||||||    
T  30799138 tcagttggtagaaacaatgcataatatatg 30799109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 35451298 - 35451261
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  35451298 ttagctcagttggtagagacaatacataatatatgcaa 35451261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 41668661 - 41668698
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||||||  |||||||||||||||||||||    
T  41668661 ttagctcagttggtatgaacaatgcataatatatgcaa 41668698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 40919417 - 40919376
Alignment:
Q  185 agtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  40919417 agtttagctcagttggtaggaacaatgcataatatatgcaag 40919376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 37015891 - 37015853
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  37015891 ttagctcagttggtagagacaatgcataatatatgcaag 37015853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 1230721 - 1230682
Alignment:
Q  183 cgagtttagctcagttggtagaaacaatgcataatatatg 222  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  1230721 cgagtttaactcagttggtaggaacaatgcataatatatg 1230682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 13286137 - 13286176
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  13286137 ttagctcagttggtatagacaatgcataatatatgcaaga 13286176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 7553681 - 7553723
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||| ||||||||||||  |||||||||||||||||||||    
T  7553681 gagtttaactcagttggtagggacaatgcataatatatgcaag 7553723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 8717534 - 8717492
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  8717534 gagtttagctcagttggtatggacaatgcataatatatgcaag 8717492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 11708992 - 11709030
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  11708992 ttagctcagttggtagggacaatgcataatatatgcaag 11709030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 12714429 - 12714387
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||| ||  |||||||||||||||||||||    
T  12714429 gagtttagctcagttggaagggacaatgcataatatatgcaag 12714387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 13575291 - 13575333
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||||||  ||||||||||| |||||||||    
T  13575291 gagtttagctcagttggtagggacaatgcataacatatgcaag 13575333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 20469366 - 20469328
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  20469366 ttagatcagttggtataaacaatgcataatatatgcaag 20469328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 29652220 - 29652262
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||| ||  ||||||||||||||||||||||    
T  29652220 gagtttagctcagttgataagaacaatgcataatatatgcaag 29652262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 33445576 - 33445614
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  33445576 ttagctcagttggtaggaacaatgcataatatatacaag 33445614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 36018585 - 36018547
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  36018585 ttagcttagttggtagagacaatgcataatatatgcaag 36018547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 39821890 - 39821928
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  39821890 ttagctcagttggtagggacaatgcataatatatgcaag 39821928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 44019555 - 44019593
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  44019555 ttagctcagttggtaagaacaatgcataatatatgcaag 44019593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 444127 - 444168
Alignment:
Q  185 agtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||| | ||||||||||||| |||||||    
T  444127 agtttagctcagttggtaaagacaatgcataatacatgcaag 444168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 15167055 - 15167088
Alignment:
Q  187 tttagctcagttggtagaaacaatgcataatata 220  Q
    ||||||||||||||||| ||||||||||||||||    
T  15167055 tttagctcagttggtaggaacaatgcataatata 15167088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 29908018 - 29908055
Alignment:
Q  189 tagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||  |||||||||||||||||||||    
T  29908018 tagctcagttggtagggacaatgcataatatatgcaag 29908055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 31336857 - 31336824
Alignment:
Q  193 tcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||| ||||||||||||||||||||||    
T  31336857 tcagttggtaggaacaatgcataatatatgcaag 31336824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 37750058 - 37750017
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||||||| ||  |||||||||||||||||||||    
T  37750058 gagtttagctcagttgatatgaacaatgcataatatatgcaa 37750017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 1243800 - 1243760
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgca 224  Q
    |||||||  |||||| |||||||||||||||||||||||||    
T  1243800 gagtttaattcagtttgtagaaacaatgcataatatatgca 1243760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 1254500 - 1254460
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgca 224  Q
    |||||||  |||||| |||||||||||||||||||||||||    
T  1254500 gagtttaattcagtttgtagaaacaatgcataatatatgca 1254460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 3758013 - 3757973
Alignment:
Q  187 tttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||||||||||| ||| |||||||||||||||||| ||||    
T  3758013 tttagctcagttgataggaacaatgcataatatatgtaaga 3757973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 33996080 - 33996112
Alignment:
Q  193 tcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||| ||||||||||||||||||||    
T  33996080 tcagttggtagagacaatgcataatatatgcaa 33996112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 35700445 - 35700413
Alignment:
Q  193 tcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||| ||||||||||||||||||||    
T  35700445 tcagttggtagagacaatgcataatatatgcaa 35700413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 45970758 - 45970723
Alignment:
Q  192 ctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||||||||||||||||||||||||||||||||||    
T  45970758 ctcagttggtagaaacaatgcataatatatgcaaga 45970723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 21317393 - 21317355
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  21317393 ttagctcagttggtagagacaatgcataatatatgcaag 21317355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 2649791 - 2649750
Alignment:
Q  185 agtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||||  |||||||||||||||||||||    
T  2649791 agtttagctcagttggtagggacaatgcataatatatgcaag 2649750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 8494993 - 8495032
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  8494993 ttagctcagttggtagggacaatgcataatatatgcaaga 8495032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 12671807 - 12671764
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||    
T  12671807 gagtttagctcagttggtatagacaatgcataaaatatgcaaga 12671764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 23154600 - 23154639
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  23154600 ttagctcagttggttgaaacaatgcataaaatatgcaaga 23154639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 38812908 - 38812865
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    |||||||||||||| |||||  ||||||||||||||||||||||    
T  38812908 gagtttagctcagtcggtagggacaatgcataatatatgcaaga 38812865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 3299153 - 3299111
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||| ||||||||||  |||||||||||||||||||||||    
T  3299153 gagtttaactcagttggttaaaacaatgcataatatatgcaag 3299111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 3936633 - 3936671
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  3936633 ttagctcagttggtatgaacaatgcataatatatgcaag 3936671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 11286836 - 11286798
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  11286836 ttagttcagttggtagagacaatgcataatatatgcaag 11286798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 17423228 - 17423194
Alignment:
Q  192 ctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||| |||||||||||||||||||||    
T  17423228 ctcagttggtagagacaatgcataatatatgcaag 17423194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 18458754 - 18458788
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataata 218  Q
    ||||||| |||||||||||||||||||||||||||    
T  18458754 gagtttaactcagttggtagaaacaatgcataata 18458788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 20403223 - 20403185
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  20403223 ttagctcagttgataggaacaatgcataatatatgcaag 20403185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 20799449 - 20799411
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  20799449 ttagctcagttggtagggacaatgcataatatatgcaag 20799411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 22164328 - 22164290
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatg 222  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  22164328 gagtttagcttagttggtaggaacaatgcataatatatg 22164290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 27655737 - 27655775
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  27655737 ttagttcagttgatagaaacaatgcataatatatgcaag 27655775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 28031814 - 28031856
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||| | |||||||||||| |||||||||    
T  28031814 gagtttagctcagttggttggaacaatgcataaaatatgcaag 28031856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 28435307 - 28435265
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  28435307 gagtttagctcagttggtatggacaatgcataatatatgcaag 28435265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 34247442 - 34247484
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  34247442 gagtttagctcagttggtaaggacaatgcataatatatgcaag 34247484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 41520964 - 41520998
Alignment:
Q  192 ctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||| |||||||||||||||||||||    
T  41520964 ctcagttggtagagacaatgcataatatatgcaag 41520998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 50362194 - 50362156
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  50362194 ttagctcagttggtagggacaatgcataatatatgcaag 50362156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 54500575 - 54500609
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatg 222  Q
    ||||||||||||||||| |||||||||||||||||    
T  54500575 ttagctcagttggtagagacaatgcataatatatg 54500609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 55430598 - 55430640
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||| |||||||||||| || |||||||||||||||||||    
T  55430598 gagtttaactcagttggtaggaataatgcataatatatgcaag 55430640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 14577566 - 14577525
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||||||||||   ||||||||||||||||||||    
T  14577566 gagtttagctcagttggtaaggacaatgcataatatatgcaa 14577525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 16304156 - 16304115
Alignment:
Q  185 agtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||||   |||||||||||||||||||||    
T  16304156 agtttagctcagttggtatggacaatgcataatatatgcaag 16304115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 42198631 - 42198594
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  42198631 ttagctcagttggtataaacaatgcataaaatatgcaa 42198594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 19997414 - 19997382
Alignment:
Q  193 tcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||| ||||||||||||||||||||    
T  19997414 tcagttggtagagacaatgcataatatatgcaa 19997382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 22279575 - 22279535
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaagac 228  Q
    |||||||||||||||   |||||||||||||||||||||||    
T  22279575 ttagctcagttggtaaggacaatgcataatatatgcaagac 22279535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 39669551 - 39669515
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgca 224  Q
    |||||||||||||||| |||| |||||||||||||||    
T  39669551 ttagctcagttggtaggaacattgcataatatatgca 39669515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 50376714 - 50376674
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgca 224  Q
    ||||||| ||||||||||||| ||| |||||||||||||||    
T  50376714 gagtttaactcagttggtagagacattgcataatatatgca 50376674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 11014234 - 11014277
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||    
T  11014234 gagtttagctcagttggtagagacagtgcataatatatgcaaga 11014277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 14905475 - 14905421
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaagacccgatgttca 238  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||| ||||||||||    
T  14905475 gagtttaactcagttggtagaaacaatacttaatatatgtaagatccgatgttca 14905421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 16533092 - 16533050
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  16533092 gagtttagctcggttggtaggaacaatgcataatatatgcaag 16533050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 44243875 - 44243913
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatg 222  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  44243875 gagtttagctcagttggtaggaacaatgcataatatatg 44243913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 47961348 - 47961306
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||| ||| |||||||||||||||||||||    
T  47961348 gagtttagctcagttggcagagacaatgcataatatatgcaag 47961306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 37045199 - 37045163
Alignment:
Q  190 agctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||| ||||||||||||||||||||||    
T  37045199 agctcagttggtaggaacaatgcataatatatgcaag 37045163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 50533077 - 50533113
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgca 224  Q
    ||||||||||||||||||||| |||||||||||||||    
T  50533077 ttagctcagttggtagaaacattgcataatatatgca 50533113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 23171352 - 23171313
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||||||||||||| |||||||||||| |||||||||||    
T  23171352 ttagctcagttggtaaaaacaatgcatagtatatgcaaga 23171313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 3393627 - 3393585
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||| ||  ||||||||||||||||||||||    
T  3393627 gagtttagctcagttgatatgaacaatgcataatatatgcaag 3393585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 3528528 - 3528490
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatg 222  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  3528528 gagtttagctcagttgatagaaacaatgtataatatatg 3528490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 5503820 - 5503782
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  5503820 ttagctcagttggtagaaacaatgcataaaatatacaag 5503782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 7925370 - 7925404
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatg 222  Q
    ||||||||||||||||| |||||||||||||||||    
T  7925370 ttagctcagttggtagagacaatgcataatatatg 7925404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 13234084 - 13234122
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  13234084 ttagctcagttggtaggaacaacgcataatatatgcaag 13234122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 21400078 - 21400040
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  21400078 ttagctcagttggtagggacaatgcataatatatgcaag 21400040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 28032286 - 28032328
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||    
T  28032286 gagtttagctcggttagtaaaaacaatgcataatatatgcaag 28032328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 29234033 - 29233991
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||||| | ||||||||||| |||||||||    
T  29234033 gagtttagctcagttggtatagacaatgcataaaatatgcaag 29233991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 30561725 - 30561767
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||| ||||||||  ||||||||||||||||||||||    
T  30561725 gagtttagctaagttggtaagaacaatgcataatatatgcaag 30561767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 30795707 - 30795745
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  30795707 ttagctcagttggtaagaacaatgcataatatatgcaag 30795745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 32497532 - 32497498
Alignment:
Q  192 ctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||| ||||||||||||||||||||||    
T  32497532 ctcagttggtaggaacaatgcataatatatgcaag 32497498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 32950812 - 32950778
Alignment:
Q  192 ctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||| |||||||||||||||||||||||    
T  32950812 ctcagttggtataaacaatgcataatatatgcaag 32950778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 34521249 - 34521207
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  34521249 gagtttagctcagttggtatggacaatgcataatatatgcaag 34521207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 34632175 - 34632225
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaagacccgatgttca 238  Q
    ||||||||||||||| | |||||| ||||||||||||||| |||| |||||    
T  34632175 ttagctcagttggtatagacaatgtataatatatgcaagatccgaggttca 34632225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Complemental strand, 36371095 - 36371061
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatg 222  Q
    ||||||||||||||||| |||||||||||||||||    
T  36371095 ttagctcagttggtagagacaatgcataatatatg 36371061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 48681988 - 48681950
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  48681988 ttagctcagttggtatgaacaatgcataatatatgcaag 48681950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 52441566 - 52441528
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  52441566 ttagctcagttggtatagacaatgcataatatatgcaag 52441528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 14393 - 14426
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatat 221  Q
    ||||||||||||||| ||||||||||||||||||    
T  14393 ttagctcagttggtataaacaatgcataatatat 14426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 1864277 - 1864236
Alignment:
Q  185 agtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||| || |||||||||| |||||||||||||||||||||    
T  1864277 agtttaacttagttggtagagacaatgcataatatatgcaag 1864236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 3431332 - 3431373
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    ||||||| |||||||||||| || ||||||||||||||||||    
T  3431332 gagtttaactcagttggtaggaagaatgcataatatatgcaa 3431373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 12269034 - 12269001
Alignment:
Q  193 tcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||| ||||||||||||||||||||||    
T  12269034 tcagttggtaggaacaatgcataatatatgcaag 12269001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 13775665 - 13775628
Alignment:
Q  189 tagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  13775665 tagctcagttagtagagacaatgcataatatatgcaag 13775628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 18166608 - 18166645
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  18166608 ttagctcagttggtatagacaatgcataatatatgcaa 18166645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 24695561 - 24695602
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||||||||||  |||||| ||||||||||||||    
T  24695561 gagtttagctcagttggtatgaacaatacataatatatgcaa 24695602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 29741995 - 29741950
Alignment:
Q  182 tcgagtttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||| ||||||||||||||||| |||| |||||||||||| ||||    
T  29741995 tcgagcttagctcagttggtagatacaacgcataatatatgtaaga 29741950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 40214738 - 40214701
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatat 221  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  40214738 gagttgagctcagttggtagaaacaatacataatatat 40214701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 5291139 - 5291107
Alignment:
Q  192 ctcagttggtagaaacaatgcataatatatgca 224  Q
    |||||||||||| ||||||||||||||||||||    
T  5291139 ctcagttggtaggaacaatgcataatatatgca 5291107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 25365052 - 25365012
Alignment:
Q  187 tttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    |||| |||||||||||  |||||||||||||||||||||||    
T  25365052 tttaactcagttggtaagaacaatgcataatatatgcaaga 25365012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 28455403 - 28455371
Alignment:
Q  193 tcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||| ||||||||||||||||||||    
T  28455403 tcagttggtagagacaatgcataatatatgcaa 28455371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 29441940 - 29441892
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaagacccga 232  Q
    ||||||||||||||| |||| |||||| ||| |||||||||||| ||||    
T  29441940 gagtttagctcagttagtaggaacaatacatgatatatgcaagatccga 29441892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 32864303 - 32864335
Alignment:
Q  193 tcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||| ||||||||||||||||||||    
T  32864303 tcagttggtagagacaatgcataatatatgcaa 32864335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 33229733 - 33229701
Alignment:
Q  192 ctcagttggtagaaacaatgcataatatatgca 224  Q
    |||||||||||| ||||||||||||||||||||    
T  33229733 ctcagttggtaggaacaatgcataatatatgca 33229701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 39916957 - 39916993
Alignment:
Q  185 agtttagctcagttggtagaaacaatgcataatatat 221  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  39916957 agtttaactcagttggtagagacaatgcataatatat 39916993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 40618912 - 40618956
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaagac 228  Q
    ||||||| ||||||||||| | | |||||||||||||||||||||    
T  40618912 gagtttaactcagttggtaaagataatgcataatatatgcaagac 40618956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 30639485 - 30639443
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||||| || |||||||||||||||||||    
T  30639485 gagtttagctcagttggtaggaataatgcataatatatgcaag 30639443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 32193918 - 32193876
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  32193918 gagtttagctcagttggtaagaacaatgcataatatatgcaag 32193876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 331937 - 331903
Alignment:
Q  192 ctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||| |||||||||||||||||||||    
T  331937 ctcagttggtagagacaatgcataatatatgcaag 331903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 866344 - 866302
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||||||  || ||||||||||||||||||    
T  866344 gagtttagctcagttggtaggcacgatgcataatatatgcaag 866302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 1918517 - 1918475
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||| ||||||||||| | |||||||||||||||||||||    
T  1918517 gagtttaactcagttggtatagacaatgcataatatatgcaag 1918475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 2105907 - 2105945
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatg 222  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  2105907 gagtttagctcggttggtaaaaacaatgcataatatatg 2105945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 8809308 - 8809362
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaagacccgatgttca 238  Q
    |||||||| ||| ||| || |||||||||||||||||||||||| |||| |||||    
T  8809308 gagtttagttcaattgataaaaacaatgcataatatatgcaagatccgaggttca 8809362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 10780162 - 10780124
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  10780162 ttagctcagttggtagggacaatgcataatatatgcaag 10780124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 21936092 - 21936050
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||||||  |||||| |||||||||||||||    
T  21936092 gagtttagctcagttggtaagaacaattcataatatatgcaag 21936050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 24373769 - 24373727
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||| |||| |||||||| |||||||||||||||||||||    
T  24373769 gagtttaactcaattggtagagacaatgcataatatatgcaag 24373727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 32149144 - 32149182
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  32149144 ttagctcagttggtaagaacaatgcataatatatgcaag 32149182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 33938734 - 33938696
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  33938734 ttagctcagttggtatgaacaatgcataatatatgcaag 33938696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 34701153 - 34701191
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  34701153 ttagttcagttggtaggaacaatgcataatatatgcaag 34701191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 12069 - 12028
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||||||| |||| | ||||||||||||||||||    
T  12069 gagtttagctcagttgatagagataatgcataatatatgcaa 12028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 12276286 - 12276249
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||||||  |||||||||||||||||||||    
T  12276286 ttagctcagttggtaagaacaatgcataatatatgcaa 12276249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 29457183 - 29457220
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatat 221  Q
    |||||||||||||||||||| || ||||||||||||||    
T  29457183 gagtttagctcagttggtaggaaaaatgcataatatat 29457220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 20129003 - 20129031
Alignment:
Q  197 ttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||||||||||||||||||||    
T  20129003 ttggtagaaacaatgcataatatatgcaa 20129031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 22203867 - 22203839
Alignment:
Q  197 ttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||||||||||||||||||||    
T  22203867 ttggtagaaacaatgcataatatatgcaa 22203839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 26587396 - 26587436
Alignment:
Q  186 gtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||| |||  ||||||||||||||||||||||    
T  26587396 gtttagctcagttagtaagaacaatgcataatatatgcaag 26587436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 1642341 - 1642379
Alignment:
Q  189 tagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1642341 tagctcagttggtaaaaacaatgcataatatatgcaaga 1642379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 18489135 - 18489093
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||||| | |||||||||||||||||||||    
T  18489135 gagtttagctcagttggtatagacaatgcataatatatgcaag 18489093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 18538610 - 18538652
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||| |||||||||| |||||||||||||||||||||    
T  18538610 gagtttagctaagttggtagagacaatgcataatatatgcaag 18538652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 17861981 - 17862022
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  17861981 gagtttagctcagttggtagggacaatgcataatatatgcaa 17862022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 27721730 - 27721693
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||||||| |||||||||||||||||||||    
T  27721730 ttagctcagttggtaggaacaatgcataatatatgcaa 27721693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 10917333 - 10917373
Alignment:
Q  185 agtttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  10917333 agtttaactcaattggtagaaacaatgcataatatatgcaa 10917373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 224
Target Start/End: Complemental strand, 13150903 - 13150872
Alignment:
Q  193 tcagttggtagaaacaatgcataatatatgca 224  Q
    ||||||||||||||||||||||||||||||||    
T  13150903 tcagttggtagaaacaatgcataatatatgca 13150872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 20365531 - 20365488
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    |||||||||||||||||| | ||||||||||||||||| |||||    
T  20365531 gagtttagctcagttggtcggaacaatgcataatatatacaaga 20365488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 6489013 - 6489051
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  6489013 ttagctcagttggtagggacaatgcataatatatgcaag 6489051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 11017178 - 11017220
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||||||  | |||||||||||||||||||    
T  11017178 gagtttagctcagttggtagggataatgcataatatatgcaag 11017220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 13409430 - 13409472
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||| ||| | |||||||||||||||||||||    
T  13409430 gagtttagctcagttagtaaagacaatgcataatatatgcaag 13409472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 15889417 - 15889455
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  15889417 ttagctcagttggtagggacaatgcataatatatgcaag 15889455  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 18278318 - 18278276
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||| |||||||||||  ||||||||||||||||||||||    
T  18278318 gagtttaactcagttggtaagaacaatgcataatatatgcaag 18278276  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 18789042 - 18789080
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  18789042 ttagctcagttggtagagacaatgcataaaatatgcaag 18789080  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 20206526 - 20206560
Alignment:
Q  193 tcagttggtagaaacaatgcataatatatgcaaga 227  Q
    |||||||||||| ||||||||||||||||||||||    
T  20206526 tcagttggtagagacaatgcataatatatgcaaga 20206560  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 27903115 - 27903157
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||| ||||||||||  ||||||||||||||||||||||    
T  27903115 gagtttagttcagttggtatgaacaatgcataatatatgcaag 27903157  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 29962364 - 29962402
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  29962364 ttagctcagttgatagaaacaatgtataatatatgcaag 29962402  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 30012434 - 30012396
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  30012434 ttagctcagttgatagaaacaatgtataatatatgcaag 30012396  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 31591592 - 31591554
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  31591592 ttagctcagttggtaggaacaatgcatattatatgcaag 31591554  T

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Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 31602880 - 31602842
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  31602880 ttagctcagttggtatgaacaatgcataatatatgcaag 31602842  T

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Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 34206229 - 34206271
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||| ||||||||||| | |||||||||||||||||||||    
T  34206229 gagtttaactcagttggtaaagacaatgcataatatatgcaag 34206271  T

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Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 34436857 - 34436895
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  34436857 ttagctcagttggtagggacaatgcataatatatgcaag 34436895  T

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Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 37614482 - 37614444
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  37614482 ttagctcagttggtagagacaacgcataatatatgcaag 37614444  T

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Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 37791218 - 37791180
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  37791218 ttagttcagttggtagaaacaacgcataatatatgcaag 37791180  T

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Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 1669635 - 1669598
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||||||  |||||||||||||||||||||    
T  1669635 ttagctcagttggtaagaacaatgcataatatatgcaa 1669598  T

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Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 5485192 - 5485229
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  5485192 ttagctcagttggtagggacaatgcataatatatgcaa 5485229  T

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Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 19248485 - 19248522
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  19248485 ttagctcagttggtatagacaatgcataatatatgcaa 19248522  T

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Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 37054328 - 37054291
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatat 221  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  37054328 gagtttagctcagttggtagggacaatgcataatatat 37054291  T

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Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 11666014 - 11666042
Alignment:
Q  193 tcagttggtagaaacaatgcataatatat 221  Q
    |||||||||||||||||||||||||||||    
T  11666014 tcagttggtagaaacaatgcataatatat 11666042  T

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Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 39431171 - 39431143
Alignment:
Q  197 ttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||||||||||||||||||||    
T  39431171 ttggtagaaacaatgcataatatatgcaa 39431143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 41083602 - 41083562
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgca 224  Q
    ||||||||||||||||||||| ||| |||||||| ||||||    
T  41083602 gagtttagctcagttggtagagacattgcataatttatgca 41083562  T

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Target: scaffold0122 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 31215 - 31171
Alignment:
Q  183 cgagtttagctcagttggtagaaacaatgcataatatatgcaaga 227  Q
    ||||||||||||||||||||   ||||||||||||||||||||||    
T  31215 cgagtttagctcagttggtatggacaatgcataatatatgcaaga 31171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 14245 - 14203
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaag 226  Q
    ||||||| |||||||||||  ||||||||||||||||||||||    
T  14245 gagtttaactcagttggtatgaacaatgcataatatatgcaag 14203  T

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Target: scaffold1320 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 1815 - 1782
Alignment:
Q  187 tttagctcagttggtagaaacaatgcataatata 220  Q
    ||||||||||||||||| ||||||||||||||||    
T  1815 tttagctcagttggtaggaacaatgcataatata 1782  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 239809 - 239850
Alignment:
Q  184 gagtttagctcagttggtagaaacaatgcataatatatgcaa 225  Q
    |||||||||||||||||||   ||||||||||||||||||||    
T  239809 gagtttagctcagttggtaaggacaatgcataatatatgcaa 239850  T

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Target: scaffold0072 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 25701 - 25737
Alignment:
Q  188 ttagctcagttggtagaaacaatgcataatatatgca 224  Q
    |||||||||||||||  ||||||||||||||||||||    
T  25701 ttagctcagttggtaagaacaatgcataatatatgca 25737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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