View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13295_low_65 (Length: 237)

Name: NF13295_low_65
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13295_low_65
NF13295_low_65
[»] chr1 (13 HSPs)
chr1 (1-221)||(40419116-40419336)
chr1 (1-221)||(28528016-28528236)
chr1 (30-221)||(37463518-37463709)
chr1 (29-221)||(32083400-32083592)
chr1 (29-73)||(32066923-32066967)
chr1 (42-221)||(43241049-43241228)
chr1 (29-220)||(8671356-8671547)
chr1 (42-221)||(51441432-51441611)
chr1 (42-221)||(51601493-51601672)
chr1 (30-221)||(35829049-35829240)
chr1 (24-62)||(32405163-32405201)
chr1 (140-221)||(46227069-46227151)
chr1 (42-124)||(49348062-49348144)
[»] chr4 (14 HSPs)
chr4 (28-221)||(35555975-35556167)
chr4 (28-221)||(10776073-10776266)
chr4 (37-220)||(16002350-16002533)
chr4 (1-166)||(25867082-25867246)
chr4 (29-221)||(27450828-27451020)
chr4 (42-124)||(31960482-31960564)
chr4 (42-124)||(435761-435843)
chr4 (42-124)||(23906969-23907051)
chr4 (42-124)||(48174761-48174843)
chr4 (42-124)||(53707326-53707408)
chr4 (42-124)||(56374822-56374904)
chr4 (16-72)||(37677444-37677500)
chr4 (42-102)||(48623195-48623255)
chr4 (42-124)||(1777683-1777765)
[»] chr7 (14 HSPs)
chr7 (1-221)||(43793667-43793880)
chr7 (24-221)||(36869939-36870136)
chr7 (29-221)||(32630043-32630234)
chr7 (44-124)||(31004756-31004836)
chr7 (42-221)||(33350474-33350653)
chr7 (29-124)||(37616448-37616543)
chr7 (42-125)||(49028798-49028881)
chr7 (45-220)||(36651430-36651605)
chr7 (29-128)||(38606534-38606633)
chr7 (42-115)||(46356519-46356592)
chr7 (14-57)||(20499694-20499737)
chr7 (166-221)||(38606473-38606528)
chr7 (140-221)||(21520200-21520280)
chr7 (168-221)||(49028716-49028769)
[»] chr3 (11 HSPs)
chr3 (24-211)||(19757429-19757616)
chr3 (27-211)||(19736611-19736795)
chr3 (24-73)||(19757651-19757700)
chr3 (15-72)||(44395014-44395071)
chr3 (29-124)||(47542366-47542461)
chr3 (29-127)||(48221310-48221411)
chr3 (14-221)||(805386-805584)
chr3 (29-208)||(25190827-25191006)
chr3 (24-74)||(15750820-15750870)
chr3 (42-124)||(52138360-52138442)
chr3 (193-221)||(9258321-9258349)
[»] chr6 (8 HSPs)
chr6 (41-218)||(17222285-17222462)
chr6 (29-221)||(5258805-5258997)
chr6 (29-221)||(5631252-5631444)
chr6 (127-221)||(9369152-9369248)
chr6 (29-221)||(20428291-20428484)
chr6 (29-218)||(30670326-30670515)
chr6 (182-221)||(2208210-2208249)
chr6 (31-115)||(10100514-10100598)
[»] chr5 (15 HSPs)
chr5 (111-221)||(3096629-3096739)
chr5 (1-219)||(16134665-16134881)
chr5 (40-221)||(3394146-3394327)
chr5 (29-221)||(3301284-3301476)
chr5 (42-124)||(20318523-20318605)
chr5 (42-115)||(1288257-1288330)
chr5 (29-115)||(1274806-1274892)
chr5 (42-124)||(2076142-2076224)
chr5 (42-111)||(28977525-28977594)
chr5 (42-124)||(24178056-24178138)
chr5 (111-165)||(35685345-35685398)
chr5 (42-115)||(10638839-10638911)
chr5 (168-221)||(12493156-12493209)
chr5 (30-70)||(35685437-35685477)
chr5 (1-57)||(43558441-43558497)
[»] chr8 (10 HSPs)
chr8 (1-213)||(3284940-3285144)
chr8 (42-221)||(12492510-12492689)
chr8 (29-208)||(42854668-42854847)
chr8 (1-70)||(25985128-25985197)
chr8 (1-57)||(41444931-41444987)
chr8 (35-124)||(36544684-36544773)
chr8 (42-221)||(36565909-36566088)
chr8 (32-127)||(33830888-33830983)
chr8 (2-73)||(38667142-38667213)
chr8 (30-115)||(13984171-13984256)
[»] chr2 (12 HSPs)
chr2 (29-221)||(45368280-45368472)
chr2 (1-221)||(876589-876787)
chr2 (1-164)||(33594896-33595058)
chr2 (1-213)||(7292436-7292648)
chr2 (28-174)||(14769782-14769927)
chr2 (29-128)||(41763704-41763803)
chr2 (42-124)||(452284-452366)
chr2 (29-221)||(2609963-2610155)
chr2 (42-115)||(4807133-4807206)
chr2 (42-221)||(12475089-12475268)
chr2 (42-96)||(38453287-38453341)
chr2 (168-221)||(24584400-24584453)
[»] scaffold0018 (1 HSPs)
scaffold0018 (42-221)||(30903-31082)
[»] scaffold0286 (1 HSPs)
scaffold0286 (182-221)||(309-348)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40419336 - 40419116
Alignment:
Q  1 ctttcacctttacgctagaaatgctttgccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  40419336 ctttcacctttacgctagaaatgctttgccttttgctaaaattacattccatatactatgtcgtgcttctactcgagcgaaatccatacgtttctaaggc 40419237  T
Q  101 ttatctccaggtctccaacctcccattttaattcttccttcgactcttcaagtaggactatatcatagcaaaaagcacacgtcttggtgatcactcttgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  40419236 ttatctccaggtctccaacctcccattttaattcttccttcgactcttcaagtaggactacatcataacaaaaagcacacgtcttggtgatcactcttgg 40419137  T
Q  201 atgtgttccgtaagtacatcc 221  Q
    |||||||||||||||||||||    
T  40419136 atgtgttccgtaagtacatcc 40419116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 28528236 - 28528016
Alignment:
Q  1 ctttcacctttacgctagaaatgctttgccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggc 100  Q
    ||||||||| || |||||||| |||| |||| ||||||||| || || ||||||||| |||| ||||||||||   || |||  |||| ||||||||| |    
T  28528236 ctttcacctctaggctagaaacgcttcgcctcttgctaaaactatatcccatatactttgtcttgcttctactcaggcaaaagtcatatgtttctaagac 28528137  T
Q  101 ttatctccaggtctccaacctcccattttaattcttccttcgactcttcaagtaggactatatcata-gcaaaaagcacacgtcttggtgatcactcttg 199  Q
    || |||||| |||||||||||||||||| ||||||||| ||  |||| ||||||| |  |||||||  ||||| ||||  | |||||||| ||| |||||    
T  28528136 ttgtctccaagtctccaacctcccattt-aattcttccctcatctctacaagtagaatgatatcatctgcaaacagcatgcatcttggtgctcaatcttg 28528038  T
Q  200 gatgtgttccgtaagtacatcc 221  Q
    ||||||||||||||||||||||    
T  28528037 gatgtgttccgtaagtacatcc 28528016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 37463518 - 37463709
Alignment:
Q  30 cttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccatttt 129  Q
    |||||||| || |||||||||||||||| |||| || ||||||   |||  || ||||||  ||||||||||| |||| | ||||| |||||||||||      
T  37463518 cttttgctgaagttacattccatatactctgtcttgtttctacaaaagcagaagccatacacttctaaggcttgtctcaaagtctctaacctcccattc- 37463616  T
Q  130 aattcttccttcgactcttcaagtaggactatatcata-gcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    | |||  || ||||||||||||| |||||||  ||||  |||||||||| || ||| |||| | |||||||||||||||||||||| ||||||    
T  37463617 atttccaccctcgactcttcaagcaggactacgtcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtaagaacatcc 37463709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 32083400 - 32083592
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattt 128  Q
    ||||||||| || ||||||||||||||||  ||| ||||||||||   ||| || ||||||| |||| ||||||  ||||||||||| | ||||||||||    
T  32083400 ccttttgctgaagttacattccatatactccgtcttgcttctactcaggcggaaaccatacgcttctgaggcttgcctccaggtctctagcctcccattt 32083499  T
Q  129 taattcttccttcgactcttcaagtaggactatatcata-gcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
     || || ||| |||||||  |||| | || || |||||  |||||||||| || ||| |||| | |||||||||||||||| || |||||||||    
T  32083500 -aactcctccctcgactcaccaagcaagattacatcatttgcaaaaagcatacatctcggtgctaactcttggatgtgttctgtcagtacatcc 32083592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 32066923 - 32066967
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctact 73  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  32066923 ccttttgctaaaattacattacatatactatgtcatgcttctact 32066967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 221
Target Start/End: Original strand, 43241049 - 43241228
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattttaattcttccttc 141  Q
    ||||||||||||||||  ||| ||||||||||  || | |||||||||| |||||||||||| ||||||||||| | ||||||  || | ||| ||| ||    
T  43241049 ttacattccatatactccgtcttgcttctactcaagtggaatccatacgcttctaaggcttacctccaggtctctagcctccc-gttcacttcctccctc 43241147  T
Q  142 gactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    |||||  | |  | ||||| |||||  |||||||||| || ||| |||| | ||||||||||||||||||| | |||||||    
T  43241148 gactcacccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatcc 43241228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 8671547 - 8671356
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattt 128  Q
    |||| |||| || ||||||||||||||||  ||| ||||||||||  |||| |||||||||| |||||||||||  ||||| ||||| | ||||||  ||    
T  8671547 ccttctgctgaagttacattccatatactccgtcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccaagtctctagcctccc-gtt 8671449  T
Q  129 taattcttccttcgactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatc 220  Q
     | ||| ||| |||||||  | |  | ||||| |||||  |||||||||| || ||| |||| | ||||||||||||||||||| | ||||||    
T  8671448 cacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatc 8671356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 221
Target Start/End: Original strand, 51441432 - 51441611
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattttaattcttccttc 141  Q
    ||||||||||||||||  ||| ||||||||||  |||| |||||||||  |||||||||||  ||||||||||| | ||||||  || | ||| ||| ||    
T  51441432 ttacattccatatactccgtcttgcttctactcaagcggaatccatactcttctaaggcttgcctccaggtctctagcctccc-gttcacttcctccctc 51441530  T
Q  142 gactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    |||||  | |  | ||||| |||||  |||||||||| || ||| |||| | ||||||||||||||||||| | |||||||    
T  51441531 gactcacccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatcc 51441611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 221
Target Start/End: Complemental strand, 51601672 - 51601493
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattttaattcttccttc 141  Q
    ||||||||||||||||  ||| ||||| ||||  |||| |||||||||| |||||||||||  ||||||||||| | ||||||  || | ||| ||| ||    
T  51601672 ttacattccatatactccgtcttgcttttactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctccc-gttcacttcctccctc 51601574  T
Q  142 gactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    |||||  | |  | ||||| |||||  |||||||||| || ||| |||| | ||||||||||||||||||| | |||||||    
T  51601573 gactcacccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatcc 51601493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 35829049 - 35829240
Alignment:
Q  30 cttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccatttt 129  Q
    ||||||||||||||||||| |||||||| |||| ||||| ||||  ||  ||  ||||| | ||||| | ||| |||| | ||||||||||||||| ||     
T  35829049 cttttgctaaaattacatttcatatactttgtcttgcttgtactcaagaaaatgccatatgcttctaggacttgtctcaaagtctccaacctccca-ttc 35829147  T
Q  130 aattcttccttcgactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    ||||| ||  |||||||| |||| ||||| | ||| |  ||| |||||| || | | |||| |  ||||||||||||||| ||||||||||||    
T  35829148 aattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtacatcc 35829240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 32405163 - 32405201
Alignment:
Q  24 ctttgccttttgctaaaattacattccatatactatgtc 62  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  32405163 ctttgccttttgctgaaattacattccatatactctgtc 32405201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 46227069 - 46227151
Alignment:
Q  140 tcgactcttcaagtaggactatatcata-gcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    |||||||| ||| |||| ||| |||||| |||||| ||| || |||||||| | ||||||||| ||||| |||||||||||||    
T  46227069 tcgactctccaaatagggctacatcatatgcaaaaggcatacatcttggtgctaactcttggacgtgtttcgtaagtacatcc 46227151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 49348062 - 49348144
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctccc 124  Q
    |||||||| |||||||  ||| ||||||||||  |||  |||||||||| |||||||||||  ||||||||||| | ||||||    
T  49348062 ttacattcgatatactccgtcttgcttctactcaagcagaatccatacgcttctaaggcttgcctccaggtctctagcctccc 49348144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 221
Target Start/End: Original strand, 35555975 - 35556167
Alignment:
Q  28 gccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccatt 127  Q
    |||| |||||||||||||||||||||| || |||| ||||||||||  || |||| ||||| ||||||||||||| |||||| | ||||||||||||| |    
T  35555975 gcctcttgctaaaattacattccatatgctctgtcttgcttctactcaagtgaaaaccatatgtttctaaggcttgtctccaagactccaacctccca-t 35556073  T
Q  128 ttaattcttccttcgactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    ||||| |||||||||||||| ||||||||||||||||||   ||||||||| || | |||||| || |||||||| |||||| ||||||||||||    
T  35556074 ttaatccttccttcgactctccaagtaggactatatcatctacaaaaagcatacat-ttggtgctcgctcttggaggtgttctgtaagtacatcc 35556167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 28 - 221
Target Start/End: Original strand, 10776073 - 10776266
Alignment:
Q  28 gccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccatt 127  Q
    |||||||||||||||||||||||||||| |||||| ||||||| ||   ||| || |||||| |||||||||||| |||||| || ||| |||||||| |    
T  10776073 gccttttgctaaaattacattccatatagtatgtcgtgcttctgctcaggcggaagccatacatttctaaggcttgtctccaagtgtcctacctccca-t 10776171  T
Q  128 ttaattcttccttcgactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    ||||||| ||  |||||||| || |||||||||||||||  |||||||||| || ||||||||  | |||||| |||||||||||||||||||||    
T  10776172 ttaattcctctctcgactctccatgtaggactatatcatctgcaaaaagcatacatcttggtgtccgctcttgaatgtgttccgtaagtacatcc 10776266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 220
Target Start/End: Complemental strand, 16002533 - 16002350
Alignment:
Q  37 taaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattttaattctt 136  Q
    |||| ||| |||||||||||| |||| ||||||||||  |||| || ||||||| ||||||||||| |||| ||||||| | ||||||  || ||||| |    
T  16002533 taaagttatattccatatactttgtcttgcttctactcaagcgcaaaccatacgcttctaaggcttgtctctaggtctctagcctccc-gttcaattcct 16002435  T
Q  137 ccttcgactcttcaagtaggactatatcata-gcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatc 220  Q
    || || ||||  |||| | |||||  ||||| ||||||| || || ||| |||| | ||||||||||||||||||||||||||||    
T  16002434 ccctcaactcaccaagcaagactacgtcatatgcaaaaaacatacatctcggtgctaactcttggatgtgttccgtaagtacatc 16002350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 25867246 - 25867082
Alignment:
Q  1 ctttcacctttacgctagaaatgctttgccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggc 100  Q
    ||||||||| ||  |||| || |||| ||||||| ||||||||||||| |||||  |||||| ||||||| |||  ||| ||  | ||||||| |||| |    
T  25867246 ctttcacctctaaactagtaacgcttcgccttttcctaaaattacatttcatatgttatgtcttgcttctgcttaggcggaagtcgtacgtttataagac 25867147  T
Q  101 ttatctccaggtctccaacctcccattttaattcttccttcgactcttcaagtaggactatatcat 166  Q
    || ||| || ||||||||||||||| | |||||| ||| |||||||| ||||||| ||||||||||    
T  25867146 ttgtcttcaagtctccaacctccca-tgtaattcctccctcgactctccaagtagaactatatcat 25867082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 27450828 - 27451020
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattt 128  Q
    ||||||||| || |||||||||| |||||  ||| ||||||||||  |||| || ||||||| |||||||||||  ||| ||||||| | ||||||| ||    
T  27450828 ccttttgctgaagttacattccaaatactccgtcttgcttctactcaagcggaaaccatacgcttctaaggcttgcctcgaggtctctagcctccca-tt 27450926  T
Q  129 taattcttccttcgactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    | | || ||| |||||||  |||| | ||||| |||||  |||||||||| || ||| |||| | ||||||||||||||| ||| |||||||||    
T  27450927 tgactcctccctcgactcaccaagcaagactacatcatcggcaaaaagcatacatctcggtgttaactcttggatgtgtttcgttagtacatcc 27451020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 31960482 - 31960564
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctccc 124  Q
    |||||||||||||||| |||| ||||||||||  |||| |||||||||| |||||||||||  ||||||||||| | ||||||    
T  31960482 ttacattccatatactctgtcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctccc 31960564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 435843 - 435761
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctccc 124  Q
    ||||||||||||||||  ||| ||||||||||  |||| |||||||||| |||||||||||  ||||||||||| | ||||||    
T  435843 ttacattccatatactccgtcgtgcttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctccc 435761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 23906969 - 23907051
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctccc 124  Q
    ||||||||||||||||  ||| ||||||||||  |||| |||||||||| |||||||||||  ||||||||||| | ||||||    
T  23906969 ttacattccatatactccgtcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctccc 23907051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 48174761 - 48174843
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctccc 124  Q
    ||||||||||||||||  ||| ||||||||||  |||| ||| |||||| |||||||||||  ||||||||||| | ||||||    
T  48174761 ttacattccatatactccgtcttgcttctactcaagcggaattcatacgcttctaaggcttgcctccaggtctctagcctccc 48174843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 53707408 - 53707326
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctccc 124  Q
    |||||||| |||||||  ||| ||||||||||  |||| |||||||||| |||||||||||  ||||||||||| | ||||||    
T  53707408 ttacattcgatatactccgtcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctccc 53707326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 56374904 - 56374822
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctccc 124  Q
    ||||||||||||||||  ||| ||||||||||  |||| |||||||||  |||||||||||  ||||||||||| | ||||||    
T  56374904 ttacattccatatactccgtcttgcttctactcaagcggaatccatacacttctaaggcttgcctccaggtctctagcctccc 56374822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 37677444 - 37677500
Alignment:
Q  16 tagaaatgctttgccttttgctaaaattacattccatatactatgtcatgcttctac 72  Q
    |||||||||||  ||||||||||||||| |||||||||||   ||||||||||||||    
T  37677444 tagaaatgcttcaccttttgctaaaattgcattccatatatgttgtcatgcttctac 37677500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 48623195 - 48623255
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggctt 102  Q
    ||||||||||||||||  ||| ||||||||||  |||| |||||||||| |||||||||||    
T  48623195 ttacattccatatactccgtcttgcttctactcaagcggaatccatacgcttctaaggctt 48623255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 1777683 - 1777765
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctccc 124  Q
    ||||||||||||||||  ||  ||||||||||  |||| |||||||||| |||||||| ||  ||||||||||| | ||||||    
T  1777683 ttacattccatatactccgtattgcttctactcaagcggaatccatacgcttctaaggtttgcctccaggtctctagcctccc 1777765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 43793667 - 43793880
Alignment:
Q  1 ctttcacctttacgctagaaatgctttgccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggc 100  Q
    ||||||||| ||| || |||| |||| |||| |||||||| ||||||||| |||||| |||| ||||||||||  ||| ||| ||||| |||||| ||||    
T  43793667 ctttcacctctacactcgaaacgcttcgcctcttgctaaatttacattccgtatactctgtcttgcttctactcaagcaaaaaccatatgtttctgaggc 43793766  T
Q  101 ttatctccaggtctccaacctcccattttaattcttccttcgactcttcaagtaggactatatca-tagc-aaaaagcacacgtcttggtgatcactctt 198  Q
    ||        |||||||||||||||||| ||||||||||| |||||| ||||||||||||||||| | || |||||||| || |||||||| || |||||    
T  43793767 tt--------gtctccaacctcccattt-aattcttcctttgactctccaagtaggactatatcatttgcaaaaaagcatacatcttggtgctcgctctt 43793857  T
Q  199 ggatgtgttccgtaagtacatcc 221  Q
    |||||||||  ||||||||||||    
T  43793858 ggatgtgttttgtaagtacatcc 43793880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 221
Target Start/End: Original strand, 36869939 - 36870136
Alignment:
Q  24 ctttgccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcc 123  Q
    |||| |||||| || || ||||||||||||||||||||| ||||||||||  |||| || ||||||| |||||| ||||  ||||||| ||| | |||||    
T  36869939 ctttcccttttcctgaagttacattccatatactatgtcttgcttctactcaagcggaaaccatacgcttctaaagcttgcctccaggcctctagcctcc 36870038  T
Q  124 cattttaattcttccttcgactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    |  || ||||| ||| |||||||  |||| | ||||| |||||  |||||||||| || ||| |||| |  |||||||||||||||||| |||||||||    
T  36870039 c-gttcaattcctccctcgactcaccaagcaagactacatcatctgcaaaaagcatacatctcggtgctagctcttggatgtgttccgtcagtacatcc 36870136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 32630234 - 32630043
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattt 128  Q
    ||||||||| || ||||||||||||||||  ||| ||||||||||   ||| || ||||||| |||||||||||  ||||||||||| | |||||   ||    
T  32630234 ccttttgctgaagttacattccatatactccgtcttgcttctactcaggcggaaaccatacgcttctaaggcttgcctccaggtctctagcctcc--att 32630137  T
Q  129 taattcttccttcgactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    ||| || ||| | |||||  | || | ||||| |||||  |||||||||| || ||| |||| | ||||||||||||||||||| |||||||||    
T  32630136 taactcctccctagactcacctagcaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgttagtacatcc 32630043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 31004836 - 31004756
Alignment:
Q  44 acattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctccc 124  Q
    |||||||||||||| |||| ||||||||||  |||| |||||||||| |||||||||||  ||||||||||| | ||||||    
T  31004836 acattccatatactctgtcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctccc 31004756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 221
Target Start/End: Original strand, 33350474 - 33350653
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattttaattcttccttc 141  Q
    ||||||||||||||||  ||| ||||||||||  |||| |||||||||| |||||||||||  ||||||||||| | ||||||  || | ||| ||| ||    
T  33350474 ttacattccatatacttcgtcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctccc-gttcacttcctccctc 33350572  T
Q  142 gactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    |||||  | |  | ||||| |||||  |||||||||| || ||| |||| | ||||||||||||||||||| | |||||||    
T  33350573 gactcacccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatcc 33350653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 37616543 - 37616448
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctccc 124  Q
    |||| |||| || ||||||||||||||||  ||| ||||||||||  |||| |||||||||| |||||||||||  ||||||||||| | ||||||    
T  37616543 ccttctgctgaagttacattccatatactccgtcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctccc 37616448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 49028881 - 49028798
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctccca 125  Q
    ||||||||||||||||  ||| ||||||||||  |||| |||||||||| |||||||||||  ||||||||||| | |||||||    
T  49028881 ttacattccatatactccgtcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctccca 49028798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 220
Target Start/End: Complemental strand, 36651605 - 36651430
Alignment:
Q  45 cattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattttaattcttccttcgac 144  Q
    |||||||||||||  ||| ||||||||||  |||| |||||||||| |||||||||||  ||||||||||| | ||||||  || | ||| ||| |||||    
T  36651605 cattccatatactccgtcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctccc-gttcacttcctccctcgac 36651507  T
Q  145 tcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatc 220  Q
    ||  | |  | ||||| |||||  |||||||||| || ||| |||| | ||||||||||||||||||| | ||||||    
T  36651506 tcacccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatc 36651430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 38606633 - 38606534
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattt 128  Q
    |||||||| ||||||||||||||||||||  ||| ||||||||||   ||| || ||||||  |||||||||||  ||||||||||| | |||| |||||    
T  38606633 ccttttgcaaaaattacattccatatactccgtcttgcttctactcaggcggaaaccatacacttctaaggcttgcctccaggtctctagcctctcattt 38606534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 46356519 - 46356592
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctc 115  Q
    ||||||||||||||||  ||| ||||||||||  ||||  ||||||||| |||||||||||  |||||||||||    
T  46356519 ttacattccatatactccgtcttgcttctactcaagcggtatccatacgcttctaaggcttgcctccaggtctc 46356592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 20499737 - 20499694
Alignment:
Q  14 gctagaaatgctttgccttttgctaaaattacattccatatact 57  Q
    |||||||| |||| ||||||||||||||||||| ||||||||||    
T  20499737 gctagaaacgcttcgccttttgctaaaattacactccatatact 20499694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 38606528 - 38606473
Alignment:
Q  166 tagcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    |||||||||||| || |||||||| | |||||||||||||||| || |||||||||    
T  38606528 tagcaaaaagcatacatcttggtgctaactcttggatgtgttctgtcagtacatcc 38606473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 21520200 - 21520280
Alignment:
Q  140 tcgactcttcaagtaggactatatcatagcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    |||||||| |||| || |||| ||||||  |||||||| || ||| |||| | ||||||||||||||||||||| |||||||    
T  21520200 tcgactctccaagcagaactacatcatat-aaaaagcatacatctcggtgctaactcttggatgtgttccgtaaatacatcc 21520280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 49028769 - 49028716
Alignment:
Q  168 gcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    |||||||||| || |||||||| | ||||||||||||||||||| | |||||||    
T  49028769 gcaaaaagcatacatcttggtgctaactcttggatgtgttccgtcaatacatcc 49028716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 211
Target Start/End: Complemental strand, 19757616 - 19757429
Alignment:
Q  24 ctttgccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcc 123  Q
    ||||||||||||||||| |||||||||||||||| |||| ||||||||||   ||| |  ||||||| ||||||||||| |||||| ||||| |||||||    
T  19757616 ctttgccttttgctaaagttacattccatatactctgtcttgcttctactaaggcggatgccatacgcttctaaggcttgtctccaagtctctaacctcc 19757517  T
Q  124 cattttaattcttccttcgactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgt 211  Q
    || || ||||| ||| || ||||| |||| ||||||  |||||  |||||||||| || |||||||| | |||||||||||||||||||    
T  19757516 ca-ttcaattcctccctcaactctccaagcaggactgcatcatctgcaaaaagcatacatcttggtgctaactcttggatgtgttccgt 19757429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 27 - 211
Target Start/End: Complemental strand, 19736795 - 19736611
Alignment:
Q  27 tgccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccat 126  Q
    ||||||||||| || |||||||||||||||| |||| ||||||||||   ||| |  ||||||  ||||||||||| |||| | ||||| || ||||||     
T  19736795 tgccttttgctgaagttacattccatatactctgtcttgcttctactaaggcggatgccatacacttctaaggcttgtctctaagtctctaatctccca- 19736697  T
Q  127 tttaattcttccttcgactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgt 211  Q
    || ||||| ||| || ||||| |||| ||||||  |||||  |||||||||| || |||||||| | |||||||||||||||||||    
T  19736696 ttcaattcctccctcaactctccaagcaggactgcatcatctgcaaaaagcatacatcttggtgctaactcttggatgtgttccgt 19736611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 19757700 - 19757651
Alignment:
Q  24 ctttgccttttgctaaaattacattccatatactatgtcatgcttctact 73  Q
    ||||||||||||||||| |||||||||||||||| |||| ||||||||||    
T  19757700 ctttgccttttgctaaagttacattccatatactctgtcttgcttctact 19757651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 44395071 - 44395014
Alignment:
Q  15 ctagaaatgctttgccttttgctaaaattacattccatatactatgtcatgcttctac 72  Q
    |||||||||||||||||||||||||| || ||||||||||||| | || |||||||||    
T  44395071 ctagaaatgctttgccttttgctaaagttgcattccatatactctatcttgcttctac 44395014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 47542366 - 47542461
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctccc 124  Q
    |||| |||| || |||||||||||| |||  ||| ||||||||||  |||| |||||||||| |||||||||||  ||||||||||| | ||||||    
T  47542366 ccttctgctgaagttacattccatacactccgtcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctccc 47542461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 48221411 - 48221310
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccata---cgtttctaaggcttatctccaggtctccaacctccca 125  Q
    ||||||||| |||||||||| ||||||||||||| | ||||||||| || | || |||||    | ||||||||||| |||||| |||| ||||||||||    
T  48221411 ccttttgctgaaattacattacatatactatgtcttacttctacttaagtggaaaccataatgtgcttctaaggcttgtctccaagtcttcaacctccca 48221312  T
Q  126 tt 127  Q
    ||    
T  48221311 tt 48221310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 805584 - 805386
Alignment:
Q  14 gctagaaatgctttgccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtc 113  Q
    |||||||| | || |||| ||| ||||||| |||||||||||||  ||| ||||||||||  ||||| |    | | |||||||||||| |||||| |||    
T  805584 gctagaaacgtttcgcctcttgttaaaatttcattccatatactccgtcttgcttctactcaagcgagagaagtgcatttctaaggcttgtctccaagtc 805485  T
Q  114 tccaacctcccattttaattcttccttcgactcttcaagtaggactatatcata-gcaaaaagcacacgtcttggtgatcactcttggatgtgttccgta 212  Q
    || ||||||||          |||||| |||||| ||||||||||  ||||||| |||||||| | || |||||| | |  |||||||||||||||||||    
T  805484 tctaacctccc----------ttcctttgactctccaagtaggaccgtatcatatgcaaaaagtatacatcttggcgcttgctcttggatgtgttccgta 805395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 208
Target Start/End: Complemental strand, 25191006 - 25190827
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattt 128  Q
    ||||||||| || ||||||||||||||||  ||| ||||||||||| | || ||  || ||  ||||||||| |  ||| ||||||| | ||||||| ||    
T  25191006 ccttttgctgaagttacattccatatactccgtcttgcttctacttaatcggaaatcacacacttctaaggcgtgcctctaggtctctagcctccca-tt 25190908  T
Q  129 taattcttccttcgactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttc 208  Q
    ||| || ||| |||||||  |||| | ||||| |||||  |||||||||| || ||| |||| | ||||||||||||||||    
T  25190907 taactcctccctcgactcaccaagcaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttc 25190827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 15750870 - 15750820
Alignment:
Q  24 ctttgccttttgctaaaattacattccatatactatgtcatgcttctactt 74  Q
    |||||||||||||| ||||||||||||||||||| | || | |||||||||    
T  15750870 ctttgccttttgctgaaattacattccatatactttatcttacttctactt 15750820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 52138442 - 52138360
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctccc 124  Q
    ||||||||||||||||  ||| ||||||||||  | |  |||||||||| |||||||||||  ||||||||||| | ||||||    
T  52138442 ttacattccatatactccgtcttgcttctactcaaacagaatccatacgcttctaaggcttgcctccaggtctctagcctccc 52138360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 9258349 - 9258321
Alignment:
Q  193 actcttggatgtgttccgtaagtacatcc 221  Q
    |||||||||||||||||||||||||||||    
T  9258349 actcttggatgtgttccgtaagtacatcc 9258321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 218
Target Start/End: Original strand, 17222285 - 17222462
Alignment:
Q  41 attacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattttaattcttcctt 140  Q
    |||||||||||||||||||||| ||||||||||| ||||||| ||||| |||||||| | || ||||||  || ||||||||||| |||||| ||||| |    
T  17222285 attacattccatatactatgtcttgcttctacttaagcgaaagccatatgtttctaaagtttgtctccaaatcaccaacctccca-tttaatccttccct 17222383  T
Q  141 cgactcttcaagtaggactatatcata-gcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtaca 218  Q
    ||||||| ||| || |||||||||||| |  |||||||| | |||| |||||  ||||||| ||| ||| |||||||||    
T  17222384 cgactctccaaatatgactatatcatatgtgaaaagcacgcatcttagtgatttctcttggttgtcttctgtaagtaca 17222462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 5258805 - 5258997
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattt 128  Q
    ||||||||| || |||||||||||||||| |||| ||||||||||   ||| || ||||||| |||||||||||  ||||||||||| | ||||||||||    
T  5258805 ccttttgctgaagttacattccatatactttgtcttgcttctactcaggcggaagccatacgcttctaaggcttgcctccaggtctctagcctcccattt 5258904  T
Q  129 taattcttccttcgactcttcaagtaggactatatcata-gcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
     || || ||| |||||||  |||| | ||||  |||||  |||||||||| || ||| |||| | ||||||||||||||||||| |||||||||    
T  5258905 -aactcctccctcgactcaccaagcaagacttcatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcagtacatcc 5258997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 5631444 - 5631252
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattt 128  Q
    ||||||||| || |||||||||||||||| |||| ||||||||||   ||| || ||||||  |||||||||||  || |||||||||| ||||||| ||    
T  5631444 ccttttgctgaagttacattccatatactttgtcttgcttctactcatgcggaaaccatactcttctaaggcttgcctacaggtctccagcctccca-tt 5631346  T
Q  129 taattcttccttcgactcttcaagtaggactatatcata-gcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    ||| || ||| |||||||  |||| | ||||| |||||| ||||||| ||  | ||| |||| | ||||||||||||||||||| |||||||||    
T  5631345 taactcctccctcgactcaccaagaaagactagatcatatgcaaaaaacatgcatctcggtgctaactcttggatgtgttccgtcagtacatcc 5631252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 9369152 - 9369248
Alignment:
Q  127 tttaattcttccttcgactcttcaagtaggactatatca-tagc-aaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    |||||||||||||||||| || |||||| |||||||||| | || ||||| || || |||||||| || || ||||||||||| |||||||||||||    
T  9369152 tttaattcttccttcgacactccaagtaagactatatcatttgcaaaaaaacatacatcttggtgctcgcttttggatgtgtttcgtaagtacatcc 9369248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 20428291 - 20428484
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctact--tgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccat 126  Q
    ||||||||| || ||||||||||||||||  ||| |||||| |||  || |||||| ||||||| |||||||||||  ||| || | || | ||||||||    
T  20428291 ccttttgctgaagttacattccatatactccgtcttgcttccactcatg-gcgaaaaccatacgcttctaaggcttgcctctagatatctagcctcccat 20428389  T
Q  127 tttaattcttccttcgactcttcaagtaggactatatcata-gcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    || | | || |||| |||||  |||| | ||||| |||||  |||||||||| || ||| |||| | ||||||| |||||||||||||||||||||    
T  20428390 ttaactcctccctt-gactcaccaagcaagactacatcatctgcaaaaagcatacatctcggtgctaactcttgaatgtgttccgtaagtacatcc 20428484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 218
Target Start/End: Complemental strand, 30670515 - 30670326
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattt 128  Q
    ||||||||||||  ||||||| |||||||  ||| ||||||| ||  ||||||| ||||||| || ||||||||  ||| ||||||| ||||||||  ||    
T  30670515 ccttttgctaaagatacattctatatactccgtcttgcttcttctcaagcgaaaaccatacgcttataaggcttgcctctaggtctctaacctccc-gtt 30670417  T
Q  129 taattcttccttcgactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtaca 218  Q
     ||||| ||| |||||||  |||| | ||||| |||||  |||||||||| || |||   || | |||||||||||| |||||| ||||||    
T  30670416 caattcctccctcgactcaccaagcaagactacatcatctgcaaaaagcatacatctcaatgctaactcttggatgtattccgtcagtaca 30670326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 2208210 - 2208249
Alignment:
Q  182 tcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  2208210 tcttggtgctaactcttggatgtgttccgtaagtacatcc 2208249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 10100514 - 10100598
Alignment:
Q  31 ttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctc 115  Q
    |||||||||| ||||||||||||||||  ||| ||||||||||   ||| || ||||| | |||||||||| | |||| ||||||    
T  10100514 ttttgctaaagttacattccatatactccgtcttgcttctactcaggcggaaaccatatgcttctaaggctcacctcctggtctc 10100598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 3096739 - 3096629
Alignment:
Q  111 gtctccaacctcccattttaattcttccttcgactcttcaagtaggactatatcata-gcaaaaagcacacgtcttggtgatcactcttggatgtgttcc 209  Q
    |||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||| |||||| ||| || |||||||| || || ||||||||||||     
T  3096739 gtctccaacctcccattt-aattcttccttcgactctttaagtatgactatatcatatgcaaaacgcatacatcttggtgctcgcttttggatgtgttct 3096641  T
Q  210 gtaagtacatcc 221  Q
    ||||||||||||    
T  3096640 gtaagtacatcc 3096629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 16134665 - 16134881
Alignment:
Q  1 ctttcacctttacgctagaaatgctttgccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggc 100  Q
    ||||||||||||||||||||| |||| |||| |||||  |  ||||||||||||||| | |  ||||||| || ||| ||||  |||| ||||||||||     
T  16134665 ctttcacctttacgctagaaacgcttcgcctcttgct--aggtacattccatatactctttattgcttctgctcgagtgaaactcatatgtttctaaggt 16134762  T
Q  101 ttatctccaggtctccaacctcccattttaattcttccttcgactcttcaagtaggactatatcata-gcaaaaagcacacgtcttggtgatcactcttg 199  Q
    || || ||| |||| |||||||||| |||||||||||| ||||||||  ||  || ||||||||||| |  ||||||| || ||||| || |||||||||    
T  16134763 ttgtcaccaagtcttcaacctccca-tttaattcttccctcgactctcaaatcagcactatatcatatgtgaaaagcaaacatcttgatgctcactcttg 16134861  T
Q  200 gatgtgttccgtaagtacat 219  Q
    |||||||||  |||||||||    
T  16134862 gatgtgttctataagtacat 16134881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 221
Target Start/End: Complemental strand, 3394327 - 3394146
Alignment:
Q  40 aattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattttaattcttcct 139  Q
    |||||||||||||||||| |||| ||||||||||   ||| || ||||||| |||||||||||  ||||||||||| | |||||||||| || || |||     
T  3394327 aattacattccatatactctgtcttgcttctactcaggcggaaaccatacgcttctaaggcttgcctccaggtctctagcctcccattt-aactcctccc 3394229  T
Q  140 tcgactcttcaagtaggactatatcata-gcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    |||||||  |||| | ||||  |||||  |||||||||| || ||| |||| | ||||||||||||||||||| |||||||||    
T  3394228 tcgactcaccaagcaagactgcatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcagtacatcc 3394146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 3301476 - 3301284
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattt 128  Q
    ||||||||| || ||||||||||||||||  ||| ||||||||||   ||| || ||||||  |||||||||||  ||||||||||| | ||||||| ||    
T  3301476 ccttttgctgaagttacattccatatactccgtcttgcttctactcaggcggaaaccatactcttctaaggcttgcctccaggtctctagcctccca-tt 3301378  T
Q  129 taattcttccttcgactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    |||||| ||| || ||||  |||| | || |  |||||  |||||||||| || ||| |||| | |||||||||||||||| || |||||||||    
T  3301377 taattcctccctcaactcaccaagcaagattgcatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttctgtcagtacatcc 3301284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 20318605 - 20318523
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctccc 124  Q
    ||||||||||||||||  ||| ||||||||||  |||| |||||||||| |||||||||||  ||||||||||| | ||||||    
T  20318605 ttacattccatatactccgtcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctccc 20318523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 1288257 - 1288330
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctc 115  Q
    ||||||||||||||||  ||| ||||||||||  |||  |||||||||| ||||||||||| ||||||||||||    
T  1288257 ttacattccatatactccgtcttgcttctactcaagcagaatccatacgcttctaaggcttgtctccaggtctc 1288330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 1274892 - 1274806
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctc 115  Q
    ||||| ||| || ||||||||||||||||  ||| ||||||||||  | || |||||||||| |||||||||||  |||||||||||    
T  1274892 cctttcgctgaagttacattccatatactccgtcttgcttctactcaaccggaatccatacgcttctaaggcttgcctccaggtctc 1274806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 2076142 - 2076224
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctccc 124  Q
    ||||||||||| |||| |||| ||||||||||  |||| |||||||||| |||||||||||  |||||| |||| | ||||||    
T  2076142 ttacattccatgtactctgtcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccagctctctagcctccc 2076224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 28977525 - 28977594
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccagg 111  Q
    ||||||||||||||||  ||| ||||||||||  |||| |||||||||| |||||||||||  |||||||    
T  28977525 ttacattccatatactccgtcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccagg 28977594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 24178138 - 24178056
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctccc 124  Q
    ||||||||||||||||  ||| ||||||||||  |||| |||||||||  |||||||||||  || |||||||| | ||||||    
T  24178138 ttacattccatatactccgtcttgcttctactcaagcggaatccatacacttctaaggcttgccttcaggtctctagcctccc 24178056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 35685398 - 35685345
Alignment:
Q  111 gtctccaacctcccattttaattcttccttcgactcttcaagtaggactatatca 165  Q
    |||||||||| ||||||  ||||| |||| |||||||||||||||||||||||||    
T  35685398 gtctccaaccacccattc-aattcctcctccgactcttcaagtaggactatatca 35685345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 10638911 - 10638839
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctc 115  Q
    ||||||||||||||||  ||| | ||||||||  |||||| |||||||| |||||||||||  |||||||||||    
T  10638911 ttacattccatatactccgtctttcttctactcaagcgaa-tccatacgcttctaaggcttgcctccaggtctc 10638839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 12493156 - 12493209
Alignment:
Q  168 gcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    |||||||||| || |||||||| | ||||||||||||||||||| | |||||||    
T  12493156 gcaaaaagcatacatcttggtgctaactcttggatgtgttccgtcaatacatcc 12493209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 35685477 - 35685437
Alignment:
Q  30 cttttgctaaaattacattccatatactatgtcatgcttct 70  Q
    ||||||||||||||||||| |||||||| |||| |||||||    
T  35685477 cttttgctaaaattacattacatatactttgtcttgcttct 35685437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 43558441 - 43558497
Alignment:
Q  1 ctttcacctttacgctagaaatgctttgccttttgctaaaattacattccatatact 57  Q
    ||||||||| |  ||||||||  |||||||||||||||||  |||||||||||||||    
T  43558441 ctttcacctctgagctagaaacactttgccttttgctaaatctacattccatatact 43558497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 3285144 - 3284940
Alignment:
Q  1 ctttcacctttacgctagaaatgctttgccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggc 100  Q
    ||||||||| ||||||||||| |||||| || |||||||| ||||||||||||  || | || ||||||||||  ||| ||| ||||| |||||||||||    
T  3285144 ctttcacctctacgctagaaacgctttggctcttgctaaatttacattccatactctctttcttgcttctactaaagcaaaagccatatgtttctaaggc 3285045  T
Q  101 ttatctccaggtctccaacctcccattttaattcttccttcgactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttg 199  Q
    ||        ||||||| ||||||| ||||||||||||||||||||| | | ||||||||| ||||  |||||||||| |  ||||| || ||  |||||    
T  3285044 tt--------gtctccagcctccca-tttaattcttccttcgactctccgaataggactatgtcatctgcaaaaagcataaatcttgatgctctttcttg 3284954  T
Q  200 gatgtgttccgtaa 213  Q
     |||||||||||||    
T  3284953 tatgtgttccgtaa 3284940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 221
Target Start/End: Original strand, 12492510 - 12492689
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattttaattcttccttc 141  Q
    ||||||||||||||||  ||| ||||||||||  |||| |||||||||| |||||||||||| ||||||||||| | ||| ||| || | ||| ||| ||    
T  12492510 ttacattccatatactccgtcttgcttctactcaagcggaatccatacgcttctaaggcttacctccaggtctctagcct-ccagttcacttcctccctc 12492608  T
Q  142 gactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    |||||  | |  | ||||| |||||  |||||||||| || ||| |||| | ||||||||||||||||||| | |||||||    
T  12492609 gactcacccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatcc 12492689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 208
Target Start/End: Original strand, 42854668 - 42854847
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattt 128  Q
    ||||||||| || ||||||||||||||||  ||| ||||||||||   ||| || ||||||| || ||||||||  ||||||||||| | ||||||| ||    
T  42854668 ccttttgctgaagttacattccatatactccgtcttgcttctactcaggcggaaaccatacgcttttaaggcttgcctccaggtctctagcctccca-tt 42854766  T
Q  129 taattcttccttcgactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttc 208  Q
    ||| || ||| |||||||  |||| | ||||| |||||  |||||||||| || ||| |||| | ||||||||||||||||    
T  42854767 taactcctccctcgactcaccaagcaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttc 42854847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 25985197 - 25985128
Alignment:
Q  1 ctttcacctttacgctagaaatgctttgccttttgctaaaattacattccatatactatgtcatgcttct 70  Q
    ||||||||| || ||||||||||||| |||| |||||||| |||||||||||||||| |||| |||||||    
T  25985197 ctttcacctctaagctagaaatgcttcgcctcttgctaaacttacattccatatactctgtcttgcttct 25985128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 41444931 - 41444987
Alignment:
Q  1 ctttcacctttacgctagaaatgctttgccttttgctaaaattacattccatatact 57  Q
    ||||||||| || | ||||||||||| ||||||||||||||||||||||||||||||    
T  41444931 ctttcacctctaagttagaaatgcttcgccttttgctaaaattacattccatatact 41444987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 36544773 - 36544684
Alignment:
Q  35 gctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctccc 124  Q
    |||||| |||||||||||||||| |||| ||||||||||  || | |||||||||| |||||||||||  ||| ||||||| | ||||||    
T  36544773 gctaaagttacattccatatactctgtcttgcttctactcaagtggaatccatacggttctaaggcttgcctctaggtctctagcctccc 36544684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 221
Target Start/End: Original strand, 36565909 - 36566088
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattttaattcttccttc 141  Q
    ||||||| |||||||| | || ||||||||||  |||| |||||||||| |||||||||||  ||||||||||| | ||||||  || | ||| ||| ||    
T  36565909 ttacatttcatatactctatcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctctagcctccc-gttcacttcctccctc 36566007  T
Q  142 gactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    |||||  | |  | ||||| |||||  |||||||||| || ||| |||| | ||||||||||||||||||| | |||||||    
T  36566008 gactcacccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatcc 36566088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 33830888 - 33830983
Alignment:
Q  32 tttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccatt 127  Q
    ||||||||||||||||| ||||||||||||  ||||||||||    |||||  |||||  ||||||| ||| |||||| |||||| || |||||||    
T  33830888 tttgctaaaattacattacatatactatgttttgcttctactcagccgaaagtcatacacttctaagacttgtctccaagtctccgacatcccatt 33830983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 38667213 - 38667142
Alignment:
Q  2 tttcacctttacgctagaaatgctttgccttttgctaaaattacattccatatactatgtcatgcttctact 73  Q
    |||||||| || | ||||| | ||| |||||||||||||| |||||| ||||||| ||||| ||||||||||    
T  38667213 tttcacctctaggatagaactacttcgccttttgctaaaactacattacatataccatgtcttgcttctact 38667142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 13984256 - 13984171
Alignment:
Q  30 cttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctc 115  Q
    |||||||| || |||||||||||||||| |||| ||||||||||   ||| ||  |||||  ||||||||||| |||||| |||||    
T  13984256 cttttgctgaagttacattccatatactctgtcttgcttctactcatgcggaagtcatacacttctaaggcttgtctccaagtctc 13984171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 45368280 - 45368472
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattt 128  Q
    ||||||| | || |||||||||||||||   ||| ||||||||||   |||||| ||||||| |||||||||||  ||||||||||| | ||||||| ||    
T  45368280 ccttttgttgaagttacattccatataccccgtcttgcttctactcaggcgaaaaccatacgcttctaaggcttgcctccaggtctctagcctccca-tt 45368378  T
Q  129 taattcttccttcgactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    ||| || ||| |||||||  |||| | ||||| |||||  |||||||||| || ||| |||| | | ||||||||||||||||| | |||||||    
T  45368379 taactcctccctcgactcaccaagcaagactacatcatctgcaaaaagcatacatctcggtgctaattcttggatgtgttccgtcaatacatcc 45368472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 876787 - 876589
Alignment:
Q  1 ctttcacctttacgctagaaatgctttgccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggc 100  Q
    ||||||||| || ||||| || ||||  ||| | ||||||||||||||||||| |||  ||| ||||||||  | ||||||| ||||| |||||||||||    
T  876787 ctttcacctctatgctaggaacgcttctcctctggctaaaattacattccataaactcggtcttgcttctaactaagcgaaagccatatgtttctaaggc 876688  T
Q  101 ttatctccaggtctccaacctcccattttaattcttccttcgactcttcaagtaggactatatcatagcaaaaagcacacgtcttggtgatcactcttgg 200  Q
    ||        ||||||||||||||| ||||||||||||||| ||||| | |||||||||             ||||| || |||||||| || |||||||    
T  876687 tt--------gtctccaacctccca-tttaattcttccttcaactctcctagtaggact-------------aagcatacatcttggtgctcgctcttgg 876610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 33594896 - 33595058
Alignment:
Q  1 ctttcacctttacgctagaaatgctttgccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggc 100  Q
    ||||||||||||||||| |||  ||  |||| ||||||||||||| |  |||||||| | || |||||||| |  ||||||| |||||  | ||||||||    
T  33594896 ctttcacctttacgctaaaaacactccgcctcttgctaaaattacctgtcatatactctatcttgcttctagtcaagcgaaaaccatatttctctaaggc 33594995  T
Q  101 ttatctccaggtctccaacctcccattttaattcttccttcgactcttcaagtaggactatatc 164  Q
    || ||||||  | || ||| ||||| ||||||| ||||||||||||| ||| ||||||||||||    
T  33594996 ttgtctccaattgtctaacttccca-tttaattattccttcgactctccaactaggactatatc 33595058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 7292648 - 7292436
Alignment:
Q  1 ctttcacctttacgctagaaatgctttgccttttgctaaaattacattccatatact-atgtcatgcttctacttgagcgaaatccatacgtttctaagg 99  Q
    ||||||||| ||| ||| ||| ||||| | | ||||||||||| ||||||||||| | || |  ||||| ||||| || |||| |||||  ||| ||| |    
T  7292648 ctttcacctctacactataaaagcttttcatcttgctaaaattgcattccatatattcatctt-tgcttttacttaagggaaaaccatatatttataatg 7292550  T
Q  100 cttatctccaggtctccaacctcccattttaattcttccttcgactcttcaagtaggactatatcata-gcaaaaagcacacgtcttggtgatcactctt 198  Q
     || |||||| |||| ||||||||||||| ||||||||| |||||||| |||  |||||| | ||||| ||||||| || || ||||| || || |||||    
T  7292549 attgtctccaagtcttcaacctcccattt-aattcttccctcgactctccaaacaggactctgtcatatgcaaaaatcatacatcttgatgctcgctctt 7292451  T
Q  199 ggatgtgttccgtaa 213  Q
    |||||||||||||||    
T  7292450 ggatgtgttccgtaa 7292436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 14769927 - 14769782
Alignment:
Q  28 gccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccatt 127  Q
    |||||| ||||||||||||||||||||||| |||| |||||||| |   || ||| ||  ||  ||||||||||| ||| || |||||||||||| || |    
T  14769927 gcctttagctaaaattacattccatatactctgtcttgcttctattcacgcaaaagccggacacttctaaggcttgtcttcaagtctccaacctctca-t 14769829  T
Q  128 ttaattcttccttcgactcttcaagtaggactatatcatagcaaaaa 174  Q
    | ||||| ||| |||||||| |||| | ||||| ||||| |||||||    
T  14769828 tgaattcgtccctcgactctccaagcatgactacatcatcgcaaaaa 14769782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 41763704 - 41763803
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattt 128  Q
    ||||||||| || ||||||||||||||||  ||| ||||||||||   ||| || ||||||| | |||||||||  ||||||||||| | ||||||||||    
T  41763704 ccttttgctgaagttacattccatatactccgtcttgcttctactcaggcggaaaccatacgctactaaggcttgcctccaggtctctagcctcccattt 41763803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 452284 - 452366
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctccc 124  Q
    ||||||||||||||||  ||| ||||||||||  || | |||||||||| |||||||||||  ||||||||||| | ||||||    
T  452284 ttacattccatatactccgtcttgcttctactcaagtggaatccatacgcttctaaggcttgcctccaggtctctagcctccc 452366  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 2610155 - 2609963
Alignment:
Q  29 ccttttgctaaaattacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattt 128  Q
    |||| |||| || ||||||| ||||||||  ||| ||||||||||  |||| |||||||||| |||||||||||  |||||||| || | ||||||  ||    
T  2610155 ccttctgctgaagttacatttcatatactccgtcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccaggtttctagcctccc-gtt 2610057  T
Q  129 taattcttccttcgactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
     | ||| ||| |||||||  | |  | ||||| |||||  |||||||||| || ||| |||| | ||||||||||||||||||| | |||||||    
T  2610056 cacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatcc 2609963  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 4807206 - 4807133
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctc 115  Q
    ||||||||||||||||  ||| ||||||||||  |||| |||||||||| |||||||||||  ||||| |||||    
T  4807206 ttacattccatatactccgtcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccaagtctc 4807133  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 221
Target Start/End: Original strand, 12475089 - 12475268
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattttaattcttccttc 141  Q
    ||||||||||||||||  ||| ||||| ||||  || | |||||||||| |||||||||||  ||||||||||| | ||||||  || | ||| ||| ||    
T  12475089 ttacattccatatactccgtcttgcttatactcaagaggaatccatacgcttctaaggcttgcctccaggtctctagcctccc-gttcacttcctccctc 12475187  T
Q  142 gactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    |||||  | |  | ||||| |||||  |||||||||| || ||| |||| | ||||||||||||||||||| | |||||||    
T  12475188 gactcacccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatcc 12475268  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 38453287 - 38453341
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttcta 96  Q
    ||||||||||||||||  ||| ||||||||||| |||| |||||||||| |||||    
T  38453287 ttacattccatatactccgtcttgcttctacttaagcggaatccatacgcttcta 38453341  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 24584400 - 24584453
Alignment:
Q  168 gcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    ||||||| || || ||| |||||| ||||||||||||||||||| |||||||||    
T  24584400 gcaaaaaacatacatctcggtgataactcttggatgtgttccgttagtacatcc 24584453  T

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Target: scaffold0018 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 221
Target Start/End: Complemental strand, 31082 - 30903
Alignment:
Q  42 ttacattccatatactatgtcatgcttctacttgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctcccattttaattcttccttc 141  Q
    ||||||||||||||||  ||| ||||||||||  |||| |||||||||  |||||||||||  ||||||||||| | ||||||  || | ||| ||| ||    
T  31082 ttacattccatatactcagtcttgcttctactcaagcggaatccatacacttctaaggcttgcctccaggtctctagcctccc-gttcacttcctccctc 30984  T
Q  142 gactcttcaagtaggactatatcat-agcaaaaagcacacgtcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    |||||  | |  | ||||| |||||  |||||||||| || ||| |||| | ||||||||||||||||||| | |||||||    
T  30983 gactcacccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatcc 30903  T

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Target: scaffold0286 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 309 - 348
Alignment:
Q  182 tcttggtgatcactcttggatgtgttccgtaagtacatcc 221  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  309 tcttggtgctaactcttggatgtgttccgtaagtacatcc 348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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