View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_low_67 (Length: 236)
Name: NF13295_low_67
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_67 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 38402620 - 38402827
Alignment:
| Q |
9 |
gaggagcagagacagacaaaaccacagatggaagtatcctccttgtctcttttgttagactcagaatctgcacagaaggataaatagatcatgaaaatac |
108 |
Q |
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| T |
38402620 |
gaggaacagtgacagacaaaaccacagatggaagtatcctccttgtctcttttgttagactcagaatctgcacagaaggataaatagatcatgaaaatac |
38402719 |
T |
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| Q |
109 |
aagaaaactaagtgtgagtttctgttgatgactgtgttatttaaaatcagtaacaatatgctaacattcaatacaaatataaattaagagttaatttata |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38402720 |
aagaaaactaagtgtgagtttctgttgatgactgtgttatttaaaatcagtaacaatatgctaacattcaatacaaatataaattaagagttaatttata |
38402819 |
T |
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| Q |
209 |
tacacctt |
216 |
Q |
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|||||||| |
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| T |
38402820 |
tacacctt |
38402827 |
T |
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