View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13295_low_7 (Length: 668)

Name: NF13295_low_7
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13295_low_7
NF13295_low_7
[»] chr5 (1 HSPs)
chr5 (15-649)||(5331248-5331881)


Alignment Details
Target: chr5 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 15 - 649
Target Start/End: Original strand, 5331248 - 5331881
Alignment:
Q  15 gaccgaagagagtattcgtaactgagattgtagtgatcaaactctcttttcattgtgaatgcagttttgcaaatgatgcatgctctgcatttgaggactt 114  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5331248 gaccgaagagagtattcgtaactgagattgtagtaatcaaactctcttttcattgtgaatgcagttttgcaaatgatgcatgctctgcatttgaggactt 5331347  T
Q  115 tgagaacaacccacagaacagtagtttgggttcgatgttaccatgcattaatgactcattctctggaaaattgatagctcaaattggcagcacaatccac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5331348 tgagaacaacccacagaacagtagtttgggttcgatgttaccatgcattaatgactcattctctggaaaattgatagctcaaattggcagcacaatccac 5331447  T
Q  215 actttcattgttgaggtacaannnnnnnnnngtcattcacctattcaaaaggaaatgcatacaattgtttgatagtttctgatataatggtttgtttgtg 314  Q
    |||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5331448 actttcattgttgaggtacaattttttttt-gtcattcacctattcaaaaggaaatgcatacaattgtttgatagtttctgatataatggtttgtttgtg 5331546  T
Q  315 tctcagttgaattctgacgtatcactcatgtatcagctgctaggaataggtgaagaaaatgaagaattaattggactcgtgaaaatttgtaaccctttct 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5331547 tctcagttgaattctgacgtatcactcatgtatcagctgctaggaataggtgaagaaaatgaagaattaattggactcgtgaaaatttgtaaccctttct 5331646  T
Q  415 cagggccaccaaactacagctacagtccacacaattgccctcgtgatgccattcggattggagatttaccaaaagtaagtcacgaaactctcacgctgaa 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5331647 cagggccaccaaactacagctacagtccacacaattgccctcgtgatgccattcggattggagatttaccaaaagtaagtcacgaaactctcacgctaaa 5331746  T
Q  515 tgaatagtcttgtaagattcgacttttctcataggcttaagtcatacctacggtctactagtgcttttcttgagagttaagttacgtaaaaggcggccta 614  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  5331747 tgaatagtcttgtaagattcgacttttctcataggcttaagtcataactacggtctactagtgcttttcttgagagttaagttacgtaacgggcggccta 5331846  T
Q  615 tagactttattaaggttcaccattgaataccaata 649  Q
    |||||||||||||||||||||||||||||||||||    
T  5331847 tagactttattaaggttcaccattgaataccaata 5331881  T

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