View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13295_low_71 (Length: 216)
Name: NF13295_low_71
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_71 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 13472493 - 13472305
Alignment:
| Q |
18 |
aaaatccgctgtattgattcatggcggacccaaagcaagtgcaaccaggccaattgtggtctcaaaaaatgttggggactcaattatttatttattttga |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13472493 |
aaaatccgctgtatcgattcatggcggacccaaagcaagtgcaaccaggccaattgtggtctcaaaaaatgttggggactcaattatttatttattttga |
13472394 |
T |
|
| Q |
118 |
aatcctaactaactgaacttaatcctagcacatagagagaattaattatccgtagaggatgtaactaacaaagatataaagattgatgatg |
208 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13472393 |
aatcctaactaactgaacttaatcct--cacaaagagagaattaattacccgtagaggatgtaactaacaaagatataaagattgatgatg |
13472305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University