View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13295_low_9 (Length: 654)
Name: NF13295_low_9
Description: NF13295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13295_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 566; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 75 - 644
Target Start/End: Complemental strand, 49305978 - 49305409
Alignment:
| Q |
75 |
aaagaatctaacatacagcaatcatttttcacatttttcttttctgaataagctatctcctaacctatctagaaaattaggttaagaatcaacccatcaa |
174 |
Q |
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| T |
49305978 |
aaagaatctaacatacagcaatcatttttcacatttttcttttctgaataagctatctcctaacctatctagaaaattaggttaagaatcaacccatcaa |
49305879 |
T |
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| Q |
175 |
tagaacgataagtcagttctgcaatatgtgattctagcactgagttaacgagagtcaaaatgcatgcacatacatatcaatggaataaatgcactgcttc |
274 |
Q |
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| T |
49305878 |
tagaacgataagtcagttctgcaatatgtgattctagcactgagttaacgagagtcaaaatgcatgcacatacatatcaatggaataaatgcactgcttc |
49305779 |
T |
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| Q |
275 |
ggtggattacaaattcgttcatatcattctttcataaccagattcggaaaacagacaatgttgcaggcacttcaacagtctctatctaattaactacatt |
374 |
Q |
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| T |
49305778 |
ggtggattacaaattcgttcatatcattctttcataatcagattcggaaaacagacaatgttgcaggcacttcaacagtctctatctaattaactacatt |
49305679 |
T |
|
| Q |
375 |
tttctccatattctttatcttcgtttgattaagaattcatactccacttgttcttttttccctcttgtcttttctccgaattggtatatttctaactatt |
474 |
Q |
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| T |
49305678 |
tttctccatattctttatcttcgtttgattaagaattcatactccacttgttcttttttccctcttgtcttttctccgaattggtatatttctaactatt |
49305579 |
T |
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| Q |
475 |
cgatgatgatgagatcaaaaaggaatcatgcatgttaatgttacagtacgtttattctattttgaacacaacaacacacggcttgcacccgaatcacata |
574 |
Q |
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| T |
49305578 |
cgatgatgatgagatcaaaaaggaatcatgcatgttaatgttacagtacgtttattctattttgaacacaacaacacacggcttgcacccgaatcacata |
49305479 |
T |
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| Q |
575 |
cgcaatatacatactctcgtattcataaatatatggtaagcgattttgttccattttgtttttatctgtg |
644 |
Q |
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| T |
49305478 |
cgcaatatacatactctcgtattcataaatatatggtaagcgattttgttccattttgtttttatctgtg |
49305409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 49306087 - 49306002
Alignment:
| Q |
5 |
gctagctgaattaaattttcagttggcaatgcaatttcttgcatcattcttataaataaatttcaataataaagaatctaacatac |
90 |
Q |
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| T |
49306087 |
gctagctgaattaaattttcagttggcaatgcaatttcttgcatcattcttataaataaatttcaataataaagaatctaacatac |
49306002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 512 - 607
Target Start/End: Complemental strand, 49298553 - 49298456
Alignment:
| Q |
512 |
atgttacagtacgtttattctattttgaac----acaacaacacacggcttgcacccgaatcacatacgcaatatacatactctcgtattcataaatata |
607 |
Q |
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| T |
49298553 |
atgttacagtgcgtttattctatttttaagcataacaacaacaaacggtttgcacccgaatcacatacgc--tacacatactatcgtcttcataaatata |
49298456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 512 - 575
Target Start/End: Complemental strand, 49290718 - 49290655
Alignment:
| Q |
512 |
atgttacagtacgtttattctattttgaacacaacaacacacggcttgcacccgaatcacatac |
575 |
Q |
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|||||||||| ||||||||||||| | || |||||||||||| ||||||||||||||||||| |
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| T |
49290718 |
atgttacagtgggtttattctatttccagcataacaacacacggtttgcacccgaatcacatac |
49290655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 429
Target Start/End: Complemental strand, 49298686 - 49298639
Alignment:
| Q |
380 |
ccatattctttatcttcgtttgattaagaattcatactccacttgttctt |
429 |
Q |
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| T |
49298686 |
ccatattctttatcttcgtttgattaagaattc--cctccacttgttctt |
49298639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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