View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13296_high_10 (Length: 366)
Name: NF13296_high_10
Description: NF13296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13296_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 22 - 352
Target Start/End: Complemental strand, 44926096 - 44925766
Alignment:
| Q |
22 |
agtgtcagaatgaccgatagtattcaagtcatcacaaccaatgtcattctctgcaagcacttgagaaatgtgtttcaactgagtctttgtcatggcctct |
121 |
Q |
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| T |
44926096 |
agtgtcagaatgaccgatagtattcaagtcatcacaaccaatgttattctctgcaagcacttgagaaatgtgtttcaactgagtctttgtcatggcctct |
44925997 |
T |
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| Q |
122 |
tctagttggactttccaaattttgagacgagactcatcttgaggcggtttgatctcaatgttgcaagggaataacatagtgagtttttcatcaacttcta |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44925996 |
tctagttggactttccaaattttgagacgagactcatcttgaggcggtttgatctcaatgttgcaagggaataacatagtgagtttttcatcaacttcta |
44925897 |
T |
|
| Q |
222 |
cacatttatcttcggaatcataaatccgggaaccaagtatcaaaactgaccctgaaagtttatttaatagctcatggaacaaattgtacatcctaggata |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44925896 |
cacatttatcttcggaatcataaatccgggaaccaagtatcaaaactgaccctgaaagtttatttaatagctcatggaacaaattgtacatcctaggata |
44925797 |
T |
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| Q |
322 |
ttgtcgaaggtcattctcaacattcttgatg |
352 |
Q |
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| T |
44925796 |
ttgtcgaaagtcattctcaacattcttgatg |
44925766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 94 - 315
Target Start/End: Complemental strand, 44934181 - 44933960
Alignment:
| Q |
94 |
tttcaactgagtctttgtcatggcctcttctagttggactttccaaattttgagacgagactcatcttgaggcggtttgatctcaatgttgcaagggaat |
193 |
Q |
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|||||| ||||||||| ||||||||| || ||||||| |||||| ||||||||| ||| |||||||||||| ||| ||||||| |||||| |||||||| |
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| T |
44934181 |
tttcaagtgagtctttttcatggccttttttagttggcttttccagattttgagatgagtctcatcttgaggtggtgtgatctctatgttgtaagggaat |
44934082 |
T |
|
| Q |
194 |
aacatagtgagtttttcatcaacttctacacatttatcttcggaatcataaatccgggaaccaagtatcaaaactgaccctgaaagtttatttaatagct |
293 |
Q |
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||||||||||||||||||| |||| ||| |||| || |||||||| ||||||||| |||||||| ||||| |||||||||||||||||| || |
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| T |
44934081 |
aacatagtgagtttttcattgactttggtacagttatattttaaatcataaggccgggaaccgagtatcaacactgatcctgaaagtttatttaatgtct |
44933982 |
T |
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| Q |
294 |
catggaacaaattgtacatcct |
315 |
Q |
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|||||||| |||||||||| |
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| T |
44933981 |
tttggaacaatctgtacatcct |
44933960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 111 - 291
Target Start/End: Complemental strand, 32199565 - 32199384
Alignment:
| Q |
111 |
tcatggcctcttctagttggactttccaaattttgagacgagactc-atcttgaggcggtttgatctcaatgttgcaagggaataacatagtgagttttt |
209 |
Q |
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|||| ||||||| || |||| ||||||| ||||||||||||| | |||| |||| |||||||||||| |||||||||||||||||| | || |||| |
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| T |
32199565 |
tcatagcctcttataattgggctttccagattttgagacgagtttttatctgaaggcagtttgatctcaacgttgcaagggaataacatggcaagctttt |
32199466 |
T |
|
| Q |
210 |
catcaacttctacacatttatcttcggaatcataaatccgggaaccaagtatcaaaactgaccctgaaagtttatttaatag |
291 |
Q |
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||||||||| | ||| |||||||| ||||||||||| ||||||| || ||||| ||||| ||||||||||| |||||||| |
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| T |
32199465 |
catcaacttttttacaattatcttctaaatcataaatctgggaaccgaggatcaacactgatcctgaaagtttctttaatag |
32199384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 32197091 - 32197004
Alignment:
| Q |
111 |
tcatggcctcttctagttggactttccaaattttgagacgagactca-tcttgaggcggtttgatctcaatgttgcaagggaataaca |
197 |
Q |
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|||| |||||||||| |||| ||||||| ||||||||||||| | | |||| |||| |||||||||||| ||||||||||||||||| |
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| T |
32197091 |
tcatagcctcttctaattgggctttccagattttgagacgagttttaatcttaaggcagtttgatctcaacgttgcaagggaataaca |
32197004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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