View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13296_high_11 (Length: 350)
Name: NF13296_high_11
Description: NF13296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13296_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 336
Target Start/End: Complemental strand, 4257680 - 4257354
Alignment:
| Q |
10 |
gagagatgaaccaaacttctgtggatcaactctgtcaaatattcctctccaacttcctccaaagattttcccacttcatgtttaacaaacccctctgcta |
109 |
Q |
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| T |
4257680 |
gagacatgaaccaaacttctgtggatcaactctgtcaaatattcctctccaacttcctccaaagattttcccacttcatgtttaacaaacccctctgcta |
4257581 |
T |
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| Q |
110 |
tccattgccgaatcaaccttgaactccgaattgagtaatcttctgggtatataccaaaatacaagacgcatgacttcaaataatgtggcaagtcatcata |
209 |
Q |
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| T |
4257580 |
tccattgccgaatcaaccttgaactccgaattgagtaatcttctgggtatataccaaaatacaagacacatgacttcaaataatgtggcaagtcatcata |
4257481 |
T |
|
| Q |
210 |
actcatgcctaaaattcttgttatattagctaaatgtggattatggtctaactccgaacttagattttggcatagttttttccactcagaaacagtttta |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4257480 |
actcatgcctaaaattcttgttatattagctaaatgtggattacggtctaactccgaacttagattttggcatagttttttccactcagaaacagtttta |
4257381 |
T |
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| Q |
310 |
tctttagttgacaagagacctcctata |
336 |
Q |
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||||||||||||||||||||||||||| |
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| T |
4257380 |
tctttagttgacaagagacctcctata |
4257354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 22620436 - 22620542
Alignment:
| Q |
19 |
accaaacttctgtggatcaactctgtcaaatattcctctccaacttcctccaaagattttcccacttcatgtttaacaaacccctctgctatccattgcc |
118 |
Q |
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||||||||||| |||||||||||||| || ||| | ||| ||||||| ||||||| || ||| ||| | ||| |||||||| || ||||||||||||| |
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| T |
22620436 |
accaaacttctatggatcaactctgttaagtatccttctgcaacttcttccaaagtattccccctttcttcttttacaaacccttcagctatccattgcc |
22620535 |
T |
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| Q |
119 |
gaatcaa |
125 |
Q |
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||||||| |
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| T |
22620536 |
gaatcaa |
22620542 |
T |
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