View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13296_high_12 (Length: 345)
Name: NF13296_high_12
Description: NF13296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13296_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 328
Target Start/End: Original strand, 43343935 - 43344252
Alignment:
| Q |
11 |
cacagaagaacggaaatgaaagcagcagcaaagcagatcnnnnnnncctcaggaaggacaggatagctaacagtaggaacatttcatatggcaaattatt |
110 |
Q |
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| T |
43343935 |
cacagaagaacggaaatgaaagcagcagcaaagcagatcaaaaaaacctcaggaaggacaggatagctaacagtaggaacatttcatacggtaaattatt |
43344034 |
T |
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| Q |
111 |
acttaacttaatagtgtgattggatttcatattgaaaaaatacaaaccaaaaatatctctcataagtgtattgactcttactattggaagtgaaacaaac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43344035 |
acttaacttaatagtgtgattggatttcatattgaaaagatacaaaccaaaaatatctctcttaagtgtattgactcttactattggaagtgaaacaaac |
43344134 |
T |
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| Q |
211 |
agaaccgaatcgaatgcgatgggtgatttaatttagtgagaagcatgacataacataccttaacttcctgatagagtttcttttcccatagatacagctt |
310 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43344135 |
agaaccgaatcgaatgcgataggtgatttaatttagtgagaagcatgacataacataccttaacttcctgatagagtttcttttcccatagatacagctt |
43344234 |
T |
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| Q |
311 |
gtggagtgtagagctaag |
328 |
Q |
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|||||||||||||||||| |
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| T |
43344235 |
gtggagtgtagagctaag |
43344252 |
T |
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