View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13296_high_13 (Length: 335)

Name: NF13296_high_13
Description: NF13296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13296_high_13
NF13296_high_13
[»] chr7 (10 HSPs)
chr7 (8-317)||(31050430-31050724)
chr7 (104-165)||(31107912-31107973)
chr7 (98-165)||(31145507-31145574)
chr7 (98-165)||(31163331-31163398)
chr7 (104-165)||(31062937-31062998)
chr7 (100-156)||(31202253-31202309)
chr7 (239-317)||(31063105-31063183)
chr7 (252-300)||(31145928-31145976)
chr7 (252-300)||(31163752-31163800)
chr7 (239-300)||(31108173-31108234)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 317
Target Start/End: Original strand, 31050430 - 31050724
Alignment:
Q  8 cgaagaatatggcgttatatgatgagtaggtacccaacaaacgtccagatacaggttcagaagtgttcttaattgttatcttttctccaacacactccac 107  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31050430 cgaataatatgacgttatatgatgagtaggtacccaacaaacgtccagatacaggttcagaagtgttcttaattgttatcttttctccaacacactccac 31050529  T
Q  108 tattttaccactcacttttgaaggatcaagtgttcccggtttacaaaatcgactgcaataattgaaagattccgaaaataaaattaactgtaataaatat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||                ||    
T  31050530 tattttaccactcacttttgaaggatcaagtgttcccggtttacaaaatcgactgcaataattgaaagattcctaaaataaa----------------at 31050613  T
Q  208 acacaaattatttgaaagataat-nnnnnnnncttttggaatgtgcacttacgcatcttgatttgtcacattggcaaatttagcatcaatagaatccacc 306  Q
    |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31050614 acacaaattatttgaaagataataaaaaaaaacttttggaatgtgcacttacgcatcttgatttgtcacattggcaaatttagcatcaatagaatccacc 31050713  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 31107912 - 31107973
Alignment:
Q  104 ccactattttaccactcacttttgaaggatcaagtgttcccggtttacaaaatcgactgcaa 165  Q
    |||||||||||||| ||||||||||||||||||||||||  ||| |||||||||||||||||    
T  31107912 ccactattttaccattcacttttgaaggatcaagtgttcttggtctacaaaatcgactgcaa 31107973  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 31145507 - 31145574
Alignment:
Q  98 cacactccactattttaccactcacttttgaaggatcaagtgttcccggtttacaaaatcgactgcaa 165  Q
    ||||| |||||| ||||||| ||||||||||||||||||| ||||| ||| |||||||| ||||||||    
T  31145507 cacacgccactactttaccattcacttttgaaggatcaagcgttcctggtctacaaaattgactgcaa 31145574  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 31163331 - 31163398
Alignment:
Q  98 cacactccactattttaccactcacttttgaaggatcaagtgttcccggtttacaaaatcgactgcaa 165  Q
    ||||| |||||| ||||||| ||||||||||||||||||| ||||| ||| |||||||| ||||||||    
T  31163331 cacacgccactactttaccattcacttttgaaggatcaagcgttcctggtctacaaaattgactgcaa 31163398  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 31062937 - 31062998
Alignment:
Q  104 ccactattttaccactcacttttgaaggatcaagtgttcccggtttacaaaatcgactgcaa 165  Q
    |||||||||||||  ||||||||||||||||||||||||  ||| ||||||| |||||||||    
T  31062937 ccactattttacccttcacttttgaaggatcaagtgttcttggtctacaaaaccgactgcaa 31062998  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 31202309 - 31202253
Alignment:
Q  100 cactccactattttaccactcacttttgaaggatcaagtgttcccggtttacaaaat 156  Q
    |||||||||||||| ||  ||||||||||||||||||||||||| || |||||||||    
T  31202309 cactccactattttccccttcacttttgaaggatcaagtgttcctggcttacaaaat 31202253  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 31063105 - 31063183
Alignment:
Q  239 cttttggaatgtgcacttacgcatcttgatttgtcacattggcaaatttagcatcaatagaatccaccagagtgaaaga 317  Q
    |||||||||| | ||||||||||||| |  ||||  |||||| |||||||||||||||||||| ||| ||||| |||||    
T  31063105 cttttggaatttacacttacgcatctcgggttgtggcattggaaaatttagcatcaatagaattcactagagtaaaaga 31063183  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 31145928 - 31145976
Alignment:
Q  252 cacttacgcatcttgatttgtcacattggcaaatttagcatcaatagaa 300  Q
    |||||||||||||  || ||||||||||||||||||||||||| |||||    
T  31145928 cacttacgcatctacatctgtcacattggcaaatttagcatcagtagaa 31145976  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 31163752 - 31163800
Alignment:
Q  252 cacttacgcatcttgatttgtcacattggcaaatttagcatcaatagaa 300  Q
    |||||||||||||  || ||||||||||||||||||||||||| |||||    
T  31163752 cacttacgcatctacatctgtcacattggcaaatttagcatcagtagaa 31163800  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 31108173 - 31108234
Alignment:
Q  239 cttttggaatgtgcacttacgcatcttgatttgtcacattggcaaatttagcatcaatagaa 300  Q
    |||||||| | | ||||||||||||| |||||||  ||||||| |||||||||||| |||||    
T  31108173 cttttggagtttacacttacgcatctcgatttgttgcattggccaatttagcatcagtagaa 31108234  T

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