View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13296_high_14 (Length: 331)
Name: NF13296_high_14
Description: NF13296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13296_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 5903324 - 5903024
Alignment:
| Q |
12 |
aagaaaataaactaaggtagattattgagtcaatagtcaatatttataactatattatatattttagaaaatgaacaacatattaagaaaattattgcaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
5903324 |
aagaaaataaactaaggtagattattgagtcaatagtcaatatttataactatattatat--tttagaaaatgaacaaaatattaagaaaattattgcaa |
5903227 |
T |
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| Q |
112 |
acaacttacttggattccagaccatcctttcttgatatcatcagcaacacttgaagactcattgacccatccaagcaaaatccttctattcttcccatca |
211 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5903226 |
ccaacttacatggattccagaccatcctttcttgatatcatcagcaacacttgaagactcattgacccatccaagcaaaatccttctattcttcccatca |
5903127 |
T |
|
| Q |
212 |
tcaaagaaagtttttgatgcataatattttccataatcatatctcaaaatttgttcaatattttcctcctcaaaccctttatcagggacaaatttgtcct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5903126 |
tcaaagaaagtttttgatgcataatattttccataatcatatctcaaaatttgttcaatattttcctcctcaaaccctttatcagggacaaatttgtcct |
5903027 |
T |
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| Q |
312 |
ttt |
314 |
Q |
| |
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||| |
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| T |
5903026 |
ttt |
5903024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 114 - 258
Target Start/End: Original strand, 42875113 - 42875257
Alignment:
| Q |
114 |
aacttacttggattccagaccatcctttcttgatatcatcagcaacacttgaagactcattgacccatccaagcaaaatccttctattcttcccatcatc |
213 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| |||| || | ||| ||||||||||||||||||||||| |
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| T |
42875113 |
aacttacatggattccagaccatcctttcttgacatcatcaacaacacttgaagattcattagcccaacccaacaagatccttctattcttcccatcatc |
42875212 |
T |
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| Q |
214 |
aaagaaagtttttgatgcataatattttccataatcatatctcaa |
258 |
Q |
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||| || |||||||||||||||||||| ||||||||||||||||| |
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| T |
42875213 |
aaaaaatgtttttgatgcataatatttcccataatcatatctcaa |
42875257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 1055428 - 1055322
Alignment:
| Q |
148 |
atcatcagcaacacttgaagactcattgacccatccaagcaaaatccttctattcttcccatcatcaaagaaagtttttgatgcataatattttccataa |
247 |
Q |
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||||| ||||||| |||| | |||||| |||| |||||||||||||||||||| || ||||| | ||||||| ||||||||||||||||||| | ||| |
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| T |
1055428 |
atcattagcaacatttgagtagtcattggcccaaccaagcaaaatccttctattttttccatccttaaagaaatattttgatgcataatattttgcttaa |
1055329 |
T |
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| Q |
248 |
tcatatc |
254 |
Q |
| |
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|| |||| |
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| T |
1055328 |
tcttatc |
1055322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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