View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13296_high_16 (Length: 274)
Name: NF13296_high_16
Description: NF13296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13296_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 43162352 - 43162093
Alignment:
| Q |
1 |
aaatcactatcaagatatataattatggaagaaaaaatacaaaaaatgataatgattaatcatgttaatagtaataatg--agnnnnnnnnnntgtgatt |
98 |
Q |
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| T |
43162352 |
aaatcactatcaagatatataattatggaagaaaaaatacaaaaaatgataatgattaatcatgttaatagaaataatgggagaaaaaaaaaatgtgatt |
43162253 |
T |
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| Q |
99 |
ttaattactgcatgttaacgttatttataaagctgccatgcagtggtcacaagctaaactataatttaagtatccttttgtattgtcctgttatgtgctt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43162252 |
ttaattactgcatgttaacgttatttataaagctgccatgcagtggtcacaagctaaactataatttaagtatccttttgtattgtcctgttatgtgctt |
43162153 |
T |
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| Q |
199 |
attattattacttatcctacattgtccnnnnnnnnnaaaagagtgataaagatggaagtggtg |
261 |
Q |
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||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43162152 |
att---attacttatcctacattgtccttatttttgaaaagagtgataaagatggaagtggtg |
43162093 |
T |
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