View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13296_high_19 (Length: 263)
Name: NF13296_high_19
Description: NF13296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13296_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 1750851 - 1751074
Alignment:
| Q |
7 |
taaattattcttgatacttttgggacattttctttaaatgtgaatagcatagctcttctcataatcgtttggacggtagatgaaagataaattcatttaa |
106 |
Q |
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| T |
1750851 |
taaattattcttgatacttttgggacattttctttcaatgtgaatagcatagctcttctcataatcgtttggactgtagatgaaagataaattcatttaa |
1750950 |
T |
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| Q |
107 |
ataattgaacatataaagcaaacccaccacgcatactcattatcaattaaaagcttgccaaacccttattttcctagggatttttcttttcttctctcag |
206 |
Q |
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| T |
1750951 |
ataattgaacatataaagcaaacgcaccacgcatactcattatcaattaaaagcttgccaaacccttattttcctagggatttttcttttcttctctcag |
1751050 |
T |
|
| Q |
207 |
cttatgaacaatgaacatgattgt |
230 |
Q |
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| T |
1751051 |
cttatgaacaatgaacatgattgt |
1751074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 1755931 - 1755963
Alignment:
| Q |
231 |
attcaattttaacattttgttgtattctcctcc |
263 |
Q |
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| T |
1755931 |
attcaattttaacattttgttgtattctcctcc |
1755963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 19661285 - 19661331
Alignment:
| Q |
9 |
aattattcttgatacttttgggacattttctttaaatgtgaatagca |
55 |
Q |
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| T |
19661285 |
aattattcttgatacttttgggacattttctttcgctgtgaatagca |
19661331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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