View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13296_high_20 (Length: 259)
Name: NF13296_high_20
Description: NF13296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13296_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 44925548 - 44925787
Alignment:
| Q |
19 |
gtgtctgttttgatgaaaagcgtctcctagattcactctacaaggtgattatatcaccgaaagcttttcaaagcttaaa-nnnnnnnnaatcaaagaaaa |
117 |
Q |
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| T |
44925548 |
gtgtctgttttgatgaaaagcgtctcctagattcactctacaaggtgattatatcactgaaggcttttcaaagcttaaattttttttgaatcaaagaaaa |
44925647 |
T |
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| Q |
118 |
cattatagttgacgaaatttcggtgacattgttcaatttcaattttaacaagcaacacaattgtaannnnnnnncaggtcttgctttctatattggaaac |
217 |
Q |
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| T |
44925648 |
cattatagttgacgaaattgcggtgacattgttcaatttaaattttaacaagcaacacaattgtaattttttttcaggtcttgctttctatattggaaac |
44925747 |
T |
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| Q |
218 |
tgattctgttatcttatacatcaagaatgttgagaatgac |
257 |
Q |
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| T |
44925748 |
tgattctgttatcttatacatcaagaatgttgagaatgac |
44925787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 44933879 - 44933940
Alignment:
| Q |
192 |
caggtcttgctttctatattggaaactgattctgttatcttatacatcaagaatgttgagaa |
253 |
Q |
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| T |
44933879 |
caggtcttggtttctatatcagaagctggttctgttattttatacatcaagaatgttgagaa |
44933940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 44933713 - 44933759
Alignment:
| Q |
26 |
ttttgatgaaaagcgtctcctagattcactctacaaggtgattatat |
72 |
Q |
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| T |
44933713 |
ttttgatgaaaagcttttcctacattcactctacaaggtgattatat |
44933759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 32196527 - 32196598
Alignment:
| Q |
26 |
ttttgatgaaaagcgtctcctagattcactctacaaggtgattatatcaccgaaagcttttcaaagcttaaa |
97 |
Q |
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||||| ||||||||| || |||| |||||||| |||||||||||||||| ||||||||||| |||||||| |
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| T |
32196527 |
ttttgttgaaaagcgcttcatagactcactctataaggtgattatatcactaaaagcttttcatagcttaaa |
32196598 |
T |
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