View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13296_high_21 (Length: 238)
Name: NF13296_high_21
Description: NF13296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13296_high_21 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 46 - 238
Target Start/End: Original strand, 17159388 - 17159584
Alignment:
| Q |
46 |
aatctcacatttacatggtttatattcgatggaaactagtgaatcaaactctctg-----tcaaatctaaagttggttcaccacatgttcatttatttgc |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
17159388 |
aatctcacatttacatggtttatattcgatggaaactagtgaatcaaactctctaacttatcaaatctaa-gttggttcaccacatgttgatttatttgc |
17159486 |
T |
|
| Q |
141 |
cttctacccacagatatacaagaacaagagtcataaataaaagatgtgaacaaggtttttcaagcaaggagtcatttgattgttttaataaaagcaat |
238 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
17159487 |
cttctacccacagatacacaagaacaagagtcataaataaaagatgtgaacaaggtttttcaagcaaggagtcatttgattattttaatacaagcaat |
17159584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 44 - 234
Target Start/End: Complemental strand, 17153928 - 17153733
Alignment:
| Q |
44 |
ttaatctcacatttacatggtttatattcgatggaaactagtgaatcaaactctctg-----tcaaatctaaagttggttcaccacatgttcatttattt |
138 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
17153928 |
ttaacctcacatttacatggtttatattcaatggaaactagtgaatcaaactctctaacttatcaaatctaaagttggttcacaacatgttgatttattt |
17153829 |
T |
|
| Q |
139 |
gccttctacccacagatatacaagaacaagagtcataaataaaagatgtgaacaaggtttttcaagcaaggagtcatttgattgttttaataaaag |
234 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17153828 |
gccttctacccatagatacacaagaacaagagttatatataaaagatgtgaacaaggtttttcaagcaaggagtcatttgattgttttaataaaag |
17153733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University