View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13296_low_1 (Length: 531)
Name: NF13296_low_1
Description: NF13296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13296_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 7 - 407
Target Start/End: Complemental strand, 15825333 - 15824933
Alignment:
| Q |
7 |
tccaagaatattcctaactggtcgactgctctactactcccctttgggtagagaagaatcctcctaaagcaaaaccaaataagatcaaaacacaaatgta |
106 |
Q |
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| T |
15825333 |
tccaaaaatattcctaactggtcgactgcactactactcccctttgggaagagagcaatcctcctaaagcaaaaccaaataagatcaaaacacaaatgta |
15825234 |
T |
|
| Q |
107 |
ataaatcatgtcagagagtgtatataatctattaatctatatatccaccagtggaaattgtgattcattcatttgacgtaccatggatatccaccaagaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
15825233 |
ataaatcatgtcagagagtgtatataatctattaatctatctatccaccagtggaaattgtgattcattcaaatgacgtaccatggatatccactaagaa |
15825134 |
T |
|
| Q |
207 |
cgtaaggctccgagtataacttatcaacattcaagcgggaaaaattctcaatcttccatgtgaacttctcaaatatctcaagactagtttcttgaccgtc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15825133 |
cgtaaggctccgagtataacttatcaacattcaagcgggaaaaattctcaatcttccatgtgaacttctcaaatatctcaagactagtttcttgaccgtc |
15825034 |
T |
|
| Q |
307 |
cattgctgtaaactcaagaagaacacacacagaaaaaatggaaacaattcttaattaacagaaattgatgattaaccatgacgaataccgctggtgataa |
406 |
Q |
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| T |
15825033 |
cattgctgtaaactcaagaagaacacacaaagaaaaaatagaaacaattcttaattaacagaaattgatgattaaccatgacgaataccgctggtgataa |
15824934 |
T |
|
| Q |
407 |
g |
407 |
Q |
| |
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| T |
15824933 |
g |
15824933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 468 - 515
Target Start/End: Complemental strand, 15824865 - 15824818
Alignment:
| Q |
468 |
tgcttagttattaaaatcaagacaaatactaagaacatagtacataat |
515 |
Q |
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| T |
15824865 |
tgcttagttattaaaatcaagacaaatactaagaacatagtacataat |
15824818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 230 - 301
Target Start/End: Original strand, 10213769 - 10213840
Alignment:
| Q |
230 |
tcaacattcaagcgggaaaaattctcaatcttccatgtgaacttctcaaatatctcaagactagtttcttga |
301 |
Q |
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| T |
10213769 |
tcaacattcaaccgagagaaactctcaatcttccatgtgaatttctcaaatatctcaacacttgtttcttga |
10213840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 187 - 301
Target Start/End: Complemental strand, 10214062 - 10213948
Alignment:
| Q |
187 |
ccatggatatccaccaagaacgtaaggctccgagtataacttatcaacattcaagcgggaaaaattctcaatcttccatgtgaacttctcaaatatctca |
286 |
Q |
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||||||||| ||||||| ||| ||||||| ||||| | ||| |||||||||||| | || || |||||| ||||||||||| | ||||||| ||||||| |
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| T |
10214062 |
ccatggatagccaccaacgacgaaaggctcagagtaaatcttctcaacattcaagagagagaagttctcattcttccatgtggatttctcaactatctca |
10213963 |
T |
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| Q |
287 |
agactagtttcttga |
301 |
Q |
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| | | ||||||||| |
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| T |
10213962 |
acaattgtttcttga |
10213948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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