View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13296_low_17 (Length: 268)
Name: NF13296_low_17
Description: NF13296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13296_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 245
Target Start/End: Complemental strand, 43027634 - 43027393
Alignment:
| Q |
6 |
agtgagaagaagacagttcagtgaagctttggttatttgacagatttctggcagggtttgcaactctggtttaatttggtcccgcattataattagttgt |
105 |
Q |
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| T |
43027634 |
agtgagaagaagacagttcagtgaagctttggttatttgacagatttctggctgggtttgcaactctggtttaatttggtcccgcattataattagttgt |
43027535 |
T |
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| Q |
106 |
ggaattaagttagttgaatgctaaggaacatagtgaccgaaacttctgtcgtgtatgaacttgttctgtatctcaattttgggaccatgattgcatacgg |
205 |
Q |
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| T |
43027534 |
ggaattaagttagttgaatgctaaggaacatagtgaccgaaacttctgtcgtgtatgaacttgttctgtatctcaattttgggaccatgattgcatacgg |
43027435 |
T |
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| Q |
206 |
taaaatttgattttagtg--ttgtgttctgtcgtgtatgatc |
245 |
Q |
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| T |
43027434 |
taaaatttgattttagtgttttgtgttctgtcgtgtatgatc |
43027393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 43027409 - 43027327
Alignment:
| Q |
149 |
ttctgtcgtgtatgaacttgttctgtatctcaattttgggaccatgattgcatacggtaaaatttgattttagtgttgtgttc |
231 |
Q |
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| T |
43027409 |
ttctgtcgtgtatgatcttgttctgtatctcaattttgggaccatgattgcatacggtaaaatttgattttagtgttgtgttc |
43027327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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