View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13296_low_18 (Length: 267)
Name: NF13296_low_18
Description: NF13296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13296_low_18 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 267
Target Start/End: Original strand, 28469340 - 28469602
Alignment:
| Q |
5 |
ggtagattattctgtgatctagcaatctataggttttggcactcaagtctattgttctgattatatcaaagttcaagttcatcaaattgattatgtattc |
104 |
Q |
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| T |
28469340 |
ggtacattattctgtgatctagcaatctataggttttggcactcaagtctattgttctgattatatcaaagttcaagttcgtcaaattgattatgtattc |
28469439 |
T |
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| Q |
105 |
acacgaacccacttttgatcttgctaccacacaatgtttaccttttcgaagagacaaagtttcttccaacaagttgcatccttgtctactgaaaggcttt |
204 |
Q |
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| T |
28469440 |
acacgaacccacttttgatcttgctaccacacaatgtttaccttttcgaagagacaaagtttcttccaacaagttgcatccttgtctactgaaaggcttt |
28469539 |
T |
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| Q |
205 |
ttgaacggtacttgctgaaagtcccacatcagagatgatagagcctgacacaagtttataaat |
267 |
Q |
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| T |
28469540 |
ttgaacggtacttgttgaaagtcccacatcagagatgatagagcctgacacaagtttataaat |
28469602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 28486987 - 28487158
Alignment:
| Q |
5 |
ggtagattattctgtgatctagcaatctataggttttggcactcaagtctattgttctgattatatcaaagttcaagttcatcaaattgattatgtattc |
104 |
Q |
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| T |
28486987 |
ggtacattattttgtgatctagcaatctataggttttggcattcaagtctgttgttccgattatatcaaaattcaagttcatcaaattgattatgtattc |
28487086 |
T |
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| Q |
105 |
acacgaacccacttttgatcttgctaccacacaatgtttaccttttcgaagagacaaagtttcttccaacaa |
176 |
Q |
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| T |
28487087 |
atgcgaacccacttttgatcttgctacaacacaatgtttaccttttcgaagagaaaaagtttcctccaacaa |
28487158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 30685809 - 30685979
Alignment:
| Q |
5 |
ggtagattattctgtgatctagcaatctataggttttggcactcaagtctattgttctgattatatcaaagttcaagttcatcaaattgattatgtattc |
104 |
Q |
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|||| ||||||||||| |||| ||||||||||||||| || ||||| | |||||| | |||||||||| | ||||||||||||||||| || |||||| |
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| T |
30685809 |
ggtacattattctgtggtctaacaatctataggttttcacatacaagtttgttgttcagtttatatcaaaatccaagttcatcaaattgactacgtattc |
30685908 |
T |
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| Q |
105 |
acacgaacccacttttgatcttgctaccacacaatgtttaccttttcgaagagacaaagtttcttccaacaa |
176 |
Q |
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| T |
30685909 |
acactaatccacttttgatcttgct-caacacaacgtttacctttctgacgagaggaagtttcctccaacaa |
30685979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 28487174 - 28487225
Alignment:
| Q |
176 |
agttgcatccttgtctactgaaaggctttttgaacggtacttgctgaaagtc |
227 |
Q |
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| T |
28487174 |
agttgcatccttgtctactgaaatgctttttgaacagtacttgttaaaagtc |
28487225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 30686006 - 30686056
Alignment:
| Q |
187 |
tgtctactgaaaggctttttgaacggtacttgctgaaagtcccacatcaga |
237 |
Q |
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| T |
30686006 |
tgtctactgaaatgctttttgaacagtactcgctgaaagtcccacgtcaga |
30686056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 38000230 - 38000303
Alignment:
| Q |
79 |
aagttcatcaaatt--gattatgtattcacacgaacccacttttgatcttgctaccacacaatgtttacctttt |
150 |
Q |
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| T |
38000230 |
aagttcatcaaattttgattacatattcacactaacccacctttgatctggctacaacacaatgtttaactttt |
38000303 |
T |
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