View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13296_low_2 (Length: 513)

Name: NF13296_low_2
Description: NF13296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13296_low_2
NF13296_low_2
[»] chr4 (7 HSPs)
chr4 (1-497)||(28469663-28470162)
chr4 (1-497)||(28487296-28487812)
chr4 (102-496)||(30686272-30686686)
chr4 (146-185)||(43760465-43760504)
chr4 (152-186)||(17912812-17912846)
chr4 (146-180)||(37130155-37130189)
chr4 (152-180)||(5220734-5220762)
[»] chr8 (3 HSPs)
chr8 (140-195)||(30014161-30014216)
chr8 (153-186)||(7267479-7267512)
chr8 (150-186)||(25972320-25972356)
[»] chr2 (8 HSPs)
chr2 (146-192)||(39583251-39583297)
chr2 (141-194)||(37579900-37579953)
chr2 (145-191)||(8222397-8222443)
chr2 (146-184)||(10429804-10429842)
chr2 (150-192)||(26760820-26760862)
chr2 (150-187)||(28895595-28895632)
chr2 (152-192)||(9889312-9889352)
chr2 (152-180)||(33532741-33532769)
[»] chr1 (4 HSPs)
chr1 (153-194)||(3170038-3170079)
chr1 (150-180)||(102086-102116)
chr1 (150-192)||(1289641-1289683)
chr1 (146-183)||(15685902-15685939)
[»] scaffold0092 (1 HSPs)
scaffold0092 (146-186)||(5685-5725)
[»] chr7 (4 HSPs)
chr7 (146-186)||(48243451-48243491)
chr7 (146-193)||(35021640-35021687)
chr7 (146-192)||(30898983-30899029)
chr7 (150-186)||(1596862-1596898)
[»] chr3 (2 HSPs)
chr3 (145-184)||(50338383-50338422)
chr3 (150-192)||(48505071-48505113)
[»] scaffold0245 (1 HSPs)
scaffold0245 (150-192)||(16046-16088)
[»] scaffold0060 (1 HSPs)
scaffold0060 (150-184)||(13633-13667)
[»] chr6 (1 HSPs)
chr6 (137-179)||(9040323-9040365)
[»] chr5 (3 HSPs)
chr5 (150-180)||(8397040-8397070)
chr5 (145-186)||(5090894-5090935)
chr5 (152-180)||(19439931-19439959)


Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 28469663 - 28470162
Alignment:
Q  1 tataggatggtttatgtgcctatccaaaatccgtcgggacacccattataagaccgctcgagtcctaggcgtggagaggtctgtcgagagtccctgtaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28469663 tataggatggtttatgtgcctatccaaaatccgtcgggacacccattataagaccgctcgagtcctaggcgtggagagttctgtcgagagtccctgtaca 28469762  T
Q  101 tatgtgatttggcgtgaaaaagtatgtacgagtgagaggcatctttcatcttacaagccggttttgtagggttgagttagacccaatataaatttctaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28469763 tatgtgatttggcgtgaaaaagtatgtacgagtgagaggcatctttcatcttacaagccggttttgtagggttgagttagacccaatataaatttctaag 28469862  T
Q  201 attacccatttttattttgctcacctttcataatgttagattgcattaaagcttgatgttaaattttctgattttgcacaatttgtgtttgtttaagctt 300  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28469863 agtacccatttttattttgctcacctttcataatgttagattgcattaaagcttgatgttaaattttctgattttgcacaatttgtgtttgtttaagctt 28469962  T
Q  301 gatatacatcaacataatattgttatgttaggtttttgaaaattagttatacaatgcca---tgnnnnnnnngcaggctatatctgtattgcatgaagtt 397  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||        ||||||||||||||||||||||||||||    
T  28469963 gatatacatcaacataatattgttatgttatgtttttgaaaattagttatacaatgccatgttgttttttttgcaggctatatctgtattgcatgaagtt 28470062  T
Q  398 gtcaggctggaaccaaatttacctgactcgtatcacacccttggacttgtccatggtgcaattggggatcacgaaaatgaaatgggtttttacatgatta 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470063 gtcaggctggaaccaaatttacctgactcgtatcacacccttggacttgtccatggtgcaattggggatcacgaaaatgaaatgggtttttacatgatta 28470162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 28487296 - 28487812
Alignment:
Q  1 tataggatggtttatgtgcctatccaaaatccgtcgggacacccattataagaccgctcgagtcctaggcgtg-gagaggtctgtcgagagtccctgtac 99  Q
    |||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| || |||||||||||||| ||||||||      ||||||||| ||    
T  28487296 tataagatggtttatgtgcctatctaaaatccatcgggacacccattataagaccacttgagtcctaggcgtgagagaggtc------gagtccctgaac 28487389  T
Q  100 atatgtgatttggcgtgaaaaagtatgtacgagtgagaggcatctttcatcttacaagccggttttgtagggttgagttagacccaatataaatttctaa 199  Q
    | ||||||||| || | ||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  28487390 agatgtgatttagccttaaaaagtatgtacgagtaagagacatcttttatcttacaagccggttttgtagggttgagttagacccaacacaaatttctaa 28487489  T
Q  200 gattacccatttttattttgctcacctttcataat-------------------gttagattgcattaaagcttgatgttaaatttt-ctgattttgcac 279  Q
    || |||| |||||||||| ||||| ||||||||||                   ||||||||||||||||||||||||||||||||| ||||||||||||    
T  28487490 gagtaccaatttttatttggctcaactttcataataagaagcggaacagttaatgttagattgcattaaagcttgatgttaaatttttctgattttgcac 28487589  T
Q  280 aatttgtgt--ttgtttaagcttgatatacatcaacataatattgttatgttaggtttttgaaaattagttatacaatgccatgnnnnnnnn---gcagg 374  Q
    | |||||||  ||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||           |||||    
T  28487590 agtttgtgtgtttgtttaagcttgctatacattaacataatattgttatgtttggtttttgaaaattagttatacaatgctatgttggtttttttgcagg 28487689  T
Q  375 ctatatctgtattgcatgaagttgtcaggctggaaccaaatttacctgactcgtatcacacccttggacttgtccatggtgcaattggggatcacgaaaa 474  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28487690 ctatatctgtattgcatgaagttgtcaggctggagccaaatttacctgactcgtatcacacccttggacttgtccatggtgcaattggggatcacgaaaa 28487789  T
Q  475 tgaaatgggtttttacatgatta 497  Q
    |||||||||||||||||||||||    
T  28487790 tgaaatgggtttttacatgatta 28487812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 102 - 496
Target Start/End: Original strand, 30686272 - 30686686
Alignment:
Q  102 atgtgatttggcgtgaaaaagtatgtacgagtgagaggcatctttcatcttacaagccggttttgtagggttgagttagacccaatataaatttctaaga 201  Q
    ||||||| |||| |||| |||||||||  |||||||| ||||||||| ||| ||||  ||||||||||||||||||||||||||||| ||||||||||||    
T  30686272 atgtgatctggcctgaataagtatgtataagtgagagacatctttcacctttcaagttggttttgtagggttgagttagacccaatacaaatttctaaga 30686371  T
Q  202 ttacccatttttattttgctcacctttcat--------------aatgttagattgcattaaagcttgatgttaaatttt-ctgattttgcacaattt-- 284  Q
     ||||||||||||||| | ||| |||||||              ||||||||||| ||||| |||||||||||||||||| | |||||| |||| |||      
T  30686372 gtacccatttttatttggttcagctttcattatgcggaactgttaatgttagattccattagagcttgatgttaaatttttccgattttacacagtttat 30686471  T
Q  285 gtgtttgtttaagcttgatatacatcaacataatattgttatgttaggtttttgaaaattagttatacaatgccatgnnnnnnnn---gcaggctatatc 381  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||||| |||||| |||||||||||||| |||  ||           | ||||||||      
T  30686472 gtgtttgtttaagcttgatatactttaacataatactgttatgttagctttttgcaaattagttatacattgctgtgttggcttttttgtaggctataga 30686571  T
Q  382 tgtattgcatgaagttgtcaggctggaaccaaatttacctgactcgtatcacacccttggacttgtccatggtgcaattggggatcacgaaaatgaaatg 481  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||  |||||||||||||||||||||||| ||||||||||||    
T  30686572 tgtgttgcatgaagttgtcaggctggaaccaaatttacctgacccgtatcacatccttggagctgtccatggtgcaattggggatcatgaaaatgaaatg 30686671  T
Q  482 ggtttttacatgatt 496  Q
    |||||||||||||||    
T  30686672 ggtttttacatgatt 30686686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 43760465 - 43760504
Alignment:
Q  146 tcatcttacaagccggttttgtagggttgagttagaccca 185  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  43760465 tcatcttacaagccggttttgtatggttgagtttgaccca 43760504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 17912812 - 17912846
Alignment:
Q  152 tacaagccggttttgtagggttgagttagacccaa 186  Q
    ||||||||||||||||||||||||||||| |||||    
T  17912812 tacaagccggttttgtagggttgagttaggcccaa 17912846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 37130189 - 37130155
Alignment:
Q  146 tcatcttacaagccggttttgtagggttgagttag 180  Q
    |||||||||||||||||||||||||||||| ||||    
T  37130189 tcatcttacaagccggttttgtagggttgacttag 37130155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 180
Target Start/End: Original strand, 5220734 - 5220762
Alignment:
Q  152 tacaagccggttttgtagggttgagttag 180  Q
    |||||||||||||||||||||||||||||    
T  5220734 tacaagccggttttgtagggttgagttag 5220762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 30014216 - 30014161
Alignment:
Q  140 catctttcatcttacaagccggttttgtagggttgagttagacccaatataaattt 195  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||  |||||||    
T  30014216 catctctcatcttacaagtcggttttgtagggttgagttagacccaacctaaattt 30014161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 186
Target Start/End: Complemental strand, 7267512 - 7267479
Alignment:
Q  153 acaagccggttttgtagggttgagttagacccaa 186  Q
    |||||||||||||||||||||| |||||||||||    
T  7267512 acaagccggttttgtagggttgtgttagacccaa 7267479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 25972356 - 25972320
Alignment:
Q  150 cttacaagccggttttgtagggttgagttagacccaa 186  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  25972356 cttacaagcaggttttgtagggttgagttaggcccaa 25972320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 39583251 - 39583297
Alignment:
Q  146 tcatcttacaagccggttttgtagggttgagttagacccaatataaa 192  Q
    |||||| ||||||||||||||||||| |||||||| |||||||||||    
T  39583251 tcatctaacaagccggttttgtagggatgagttaggcccaatataaa 39583297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 37579953 - 37579900
Alignment:
Q  141 atctttcatcttacaagccggttttgtagggttgagttagacccaatataaatt 194  Q
    |||||||| ||||||||| | |||||||||||||||||||||| ||| ||||||    
T  37579953 atctttcaccttacaagctgattttgtagggttgagttagaccaaatctaaatt 37579900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 8222397 - 8222443
Alignment:
Q  145 ttcatcttacaagccggttttgtagggttgagttagacccaatataa 191  Q
    |||| ||||||||||||||||||| |||||||||||| | |||||||    
T  8222397 ttcaacttacaagccggttttgtaaggttgagttagatcaaatataa 8222443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 10429804 - 10429842
Alignment:
Q  146 tcatcttacaagccggttttgtagggttgagttagaccc 184  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  10429804 tcatcttacaagccggttttgtaaggatgagttagaccc 10429842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 26760862 - 26760820
Alignment:
Q  150 cttacaagccggttttgtagggttgagttagacccaatataaa 192  Q
    ||||||||||||| ||||| || ||||||||||||||||||||    
T  26760862 cttacaagccggtattgtaaggatgagttagacccaatataaa 26760820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 28895595 - 28895632
Alignment:
Q  150 cttacaagccggttttgtagggttgagttagacccaat 187  Q
    ||||||||||||||||||| || |||||||||||||||    
T  28895595 cttacaagccggttttgtaaggatgagttagacccaat 28895632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 9889352 - 9889312
Alignment:
Q  152 tacaagccggttttgtagggttgagttagacccaatataaa 192  Q
    ||||||||||||||||| || |||||||| |||||||||||    
T  9889352 tacaagccggttttgtaaggatgagttaggcccaatataaa 9889312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 180
Target Start/End: Complemental strand, 33532769 - 33532741
Alignment:
Q  152 tacaagccggttttgtagggttgagttag 180  Q
    |||||||||||||||||||||||||||||    
T  33532769 tacaagccggttttgtagggttgagttag 33532741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 3170038 - 3170079
Alignment:
Q  153 acaagccggttttgtagggttgagttagacccaatataaatt 194  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  3170038 acaagccggttttgtggggttgtgttagacccaatataaatt 3170079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 180
Target Start/End: Complemental strand, 102116 - 102086
Alignment:
Q  150 cttacaagccggttttgtagggttgagttag 180  Q
    |||||||||||||||||||||||||||||||    
T  102116 cttacaagccggttttgtagggttgagttag 102086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 1289683 - 1289641
Alignment:
Q  150 cttacaagccggttttgtagggttgagttagacccaatataaa 192  Q
    ||||||||||||||||||| || ||||||| ||||||||||||    
T  1289683 cttacaagccggttttgtacggatgagttaaacccaatataaa 1289641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 15685939 - 15685902
Alignment:
Q  146 tcatcttacaagccggttttgtagggttgagttagacc 183  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  15685939 tcatcttacaacccggttttgtaggattgagttagacc 15685902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 5685 - 5725
Alignment:
Q  146 tcatcttacaagccggttttgtagggttgagttagacccaa 186  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  5685 tcatcttacaagccggttttgtggggttgtgttagacccaa 5725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 48243491 - 48243451
Alignment:
Q  146 tcatcttacaagccggttttgtagggttgagttagacccaa 186  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  48243491 tcatcttacaagccggttttgtggggttgtgttagacccaa 48243451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 35021687 - 35021640
Alignment:
Q  146 tcatcttacaagccggttttgtagggttgagttagacccaatataaat 193  Q
    ||||||||||||| | ||||||| |||||||||| |||||||||||||    
T  35021687 tcatcttacaagctgattttgtaaggttgagttatacccaatataaat 35021640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 30899029 - 30898983
Alignment:
Q  146 tcatcttacaagccggttttgtagggttgagttagacccaatataaa 192  Q
    |||||||||||||||||||| || || |||||||| |||||||||||    
T  30899029 tcatcttacaagccggttttttacggatgagttaggcccaatataaa 30898983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 1596862 - 1596898
Alignment:
Q  150 cttacaagccggttttgtagggttgagttagacccaa 186  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  1596862 cttacaagccggttttgtagggttgtgttaggcccaa 1596898  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 50338422 - 50338383
Alignment:
Q  145 ttcatcttacaagccggttttgtagggttgagttagaccc 184  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  50338422 ttcaccttacaagccggttttgtaaggttgagttagaccc 50338383  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 48505071 - 48505113
Alignment:
Q  150 cttacaagccggttttgtagggttgagttagacccaatataaa 192  Q
    ||||| ||||||||||||| || ||||||||||||||||||||    
T  48505071 cttactagccggttttgtaaggatgagttagacccaatataaa 48505113  T

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Target: scaffold0245 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 16088 - 16046
Alignment:
Q  150 cttacaagccggttttgtagggttgagttagacccaatataaa 192  Q
    ||||||||||||||||||| || ||||||| ||||||||||||    
T  16088 cttacaagccggttttgtacggatgagttaaacccaatataaa 16046  T

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Target: scaffold0060 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 13667 - 13633
Alignment:
Q  150 cttacaagccggttttgtagggttgagttagaccc 184  Q
    ||||||||||||||||||| |||||||||||||||    
T  13667 cttacaagccggttttgtaaggttgagttagaccc 13633  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 9040323 - 9040365
Alignment:
Q  137 aggcatctttcatcttacaagccggttttgtagggttgagtta 179  Q
    |||||| ||||| ||||||||||||||||||||||||| ||||    
T  9040323 aggcatttttcaccttacaagccggttttgtagggttgtgtta 9040365  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 180
Target Start/End: Original strand, 8397040 - 8397070
Alignment:
Q  150 cttacaagccggttttgtagggttgagttag 180  Q
    |||||||||||||||||||||||||||||||    
T  8397040 cttacaagccggttttgtagggttgagttag 8397070  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 5090935 - 5090894
Alignment:
Q  145 ttcatcttacaagccggttttgtagggttgagttagacccaa 186  Q
    |||| ||||||| |||||||||||||||||||||||| ||||    
T  5090935 ttcaccttacaatccggttttgtagggttgagttagatccaa 5090894  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 152 - 180
Target Start/End: Original strand, 19439931 - 19439959
Alignment:
Q  152 tacaagccggttttgtagggttgagttag 180  Q
    |||||||||||||||||||||||||||||    
T  19439931 tacaagccggttttgtagggttgagttag 19439959  T

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