View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13296_low_24 (Length: 235)
Name: NF13296_low_24
Description: NF13296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13296_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 31121628 - 31121427
Alignment:
| Q |
18 |
aacaataccttgaaagtgcaaggctaagctcttgcatccattaattggatatttttattaaaagaacgacactcaccgttcaaacatcctccatctacgt |
117 |
Q |
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| T |
31121628 |
aacaataccttgaaagtgcaaggctaagctcttgcatccattaattggatatttttattaaaagaacgacactcaccgttcaaacatcctccatctacat |
31121529 |
T |
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| Q |
118 |
ttattttccatgagcaatctctacaaccatcattttttgcatcgtaaacgtcaagataatgaagattggggtcttgtggccatgtaaaactacagaagaa |
217 |
Q |
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| T |
31121528 |
ttattttccatgagcaatctctacaatcgtcattttttgcatcgtaaacgtcaagataatgaagattggggtcttgtggccatgtaaaactacagaagaa |
31121429 |
T |
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| Q |
218 |
ta |
219 |
Q |
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|| |
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| T |
31121428 |
ta |
31121427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 9145869 - 9145931
Alignment:
| Q |
159 |
tcgtaaacgtcaagataatgaagattggggtcttgtggccatgtaaaactacagaagaataat |
221 |
Q |
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| T |
9145869 |
tcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcagaagaataat |
9145931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 9180563 - 9180501
Alignment:
| Q |
159 |
tcgtaaacgtcaagataatgaagattggggtcttgtggccatgtaaaactacagaagaataat |
221 |
Q |
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| T |
9180563 |
tcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcagaagaataat |
9180501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 6608764 - 6608703
Alignment:
| Q |
159 |
tcgtaaacgtcaagataatgaagattggggtcttgtggccatgtaaaactacagaagaataa |
220 |
Q |
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| T |
6608764 |
tcgtaaatgtcaagataataaacatgggggttttgaggccatgtaaaactgcaggagaataa |
6608703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 17373706 - 17373743
Alignment:
| Q |
90 |
tcaccgttcaaacatcctccatctacgtttattttcca |
127 |
Q |
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| T |
17373706 |
tcaccgttcaaacatcctccatttaagtttattttcca |
17373743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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