View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13296_low_25 (Length: 207)
Name: NF13296_low_25
Description: NF13296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13296_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 36525100 - 36525274
Alignment:
| Q |
19 |
tctcaaagggttggttctgtagcctaagaactggttcacaaatgcaaggagcacacatgaagctaagcctagaatccatgtcctgaatgttagtgctggc |
118 |
Q |
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| T |
36525100 |
tctcaaagggttggttctgtagcctaagaactggttcacaaatgcaaggagcacacatgaagctaagcctagaatccatgtcctgaatgttagtgctggc |
36525199 |
T |
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| Q |
119 |
tgagaagggtcatcagtgattggaactgttaacctcacttgctcaatgggactatcattaatgttgtattcatct |
193 |
Q |
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| T |
36525200 |
tgagaagggtcatcagtgattggaactgttaacctcacttgctcaatgggactatcattaatgttgtattcatct |
36525274 |
T |
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Target: chr7; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 36531935 - 36532106
Alignment:
| Q |
21 |
tcaaagggttggttctgtagcctaagaactggttcacaaatgcaaggagcacacatgaagctaagcctagaatccatgtcctgaatgttagtgctggctg |
120 |
Q |
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| T |
36531935 |
tcaaagggttggttctgtagcctaaaaactggttcacaaatgcaaggagaatacatgatgctaaccctagaacccatgtccggaatgttagcgctggctg |
36532034 |
T |
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| Q |
121 |
agaagggtcatcagtgattggaactgttaacctcacttgctcaatgggactatcattaatgttgtattcatc |
192 |
Q |
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| T |
36532035 |
agaagggtcatcggtgatcggaactgttagcctcacttgctcaataggactatcattaatgctatattcatc |
36532106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 36537547 - 36537719
Alignment:
| Q |
21 |
tcaaagggttggttctgtagcctaagaactggttcacaaatgcaaggagcacacatgaagctaagcctagaatccatgtcctgaatgttagtgctggctg |
120 |
Q |
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| T |
36537547 |
tcaaagggttggttttgtatcctaaaaattggttcataaatgcaaggagcacacatgatgctaaccctagaacccatgtccggaaagtaagtgctggctg |
36537646 |
T |
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| Q |
121 |
agaagggtcatcagtgattggaactgttaacctcacttgctcaatgggactatcattaatgttgtattcatct |
193 |
Q |
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| T |
36537647 |
tgaagggtcatcagtgattggaactgttagcctcacttgctcaataggagaatcatcaatgctatattcatct |
36537719 |
T |
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