View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13296_low_3 (Length: 421)
Name: NF13296_low_3
Description: NF13296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13296_low_3 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 15 - 421
Target Start/End: Complemental strand, 4488256 - 4487846
Alignment:
| Q |
15 |
aatgacaacttgagtgaaggaaatataaataagaattgcttaactacgtatagtctaacctaagatttttgtgtctattgttttagaggtccctctaaaa |
114 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4488256 |
aatgacaacttgcgtgaaggaaatataagtaaaaattgcttagctacgtatagtctaacctaagatttttgtgtctattgttttagaggtccctctaaaa |
4488157 |
T |
|
| Q |
115 |
aagctgaagagcatcttgtttgaggacattttcgaaacttatgcataagaatattcgtttaattttatagnnnnnnnnn-cctcctcgagctttgtccta |
213 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4488156 |
aagctggagagtatcttgtttgaggacatttttgaaacttatgcataagaatattcgtttaattttatagttttttttttcctcctcgagctttgtccta |
4488057 |
T |
|
| Q |
214 |
ttttctgtacccnnnnnnnttaaacttgacaaaacttaggtgcactaatgaactattgcctatgtatagtc---atagctaagtagaaggtgagagatca |
310 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4488056 |
ttttctgtacccaaaaaattaaaacttgacaaaacctaggtgcactaatgaactattgcctatgtatagtcgtcatagctaagtagaaggtgagagatca |
4487957 |
T |
|
| Q |
311 |
actattttggaaggatggaagacagacattcgtgggggacccgtgcccacataagacagctgcccaacaaaccacagtcatcttcacacaatggccacat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4487956 |
actattttggaaggatggaagacagacattcgtgggggacccgtgcccacataagacagctgcccaacaaaccacagtcatcttcacacaatggccacat |
4487857 |
T |
|
| Q |
411 |
cctcatggctc |
421 |
Q |
| |
|
||||||||||| |
|
|
| T |
4487856 |
cctcatggctc |
4487846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University