View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13296_low_4 (Length: 419)
Name: NF13296_low_4
Description: NF13296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13296_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 21 - 405
Target Start/End: Complemental strand, 49767050 - 49766664
Alignment:
| Q |
21 |
aatgcatatatattgatattagctatatatctctagaaaaagtggaaactat--gccctacaacaagagagttttcatagtatatgacagaatccaagat |
118 |
Q |
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| T |
49767050 |
aatgcatatatattgatattagctatatatctctagaaaaagtggaaactatatgccctacaacaagagagttttcatagtatatgacagaatccaagat |
49766951 |
T |
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| Q |
119 |
cgtaaacaaaactatacatgactttcaaatctaatctaacacatcgtccctgcttcttatcagtaggtttagtattacttgtacttatattatatcaact |
218 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
49766950 |
cgtaaacaaaactatacatgactttcaaatataatctaacacatcgtccctgcttcttatcagtagatttagtatcacttgtacttatattatatcaact |
49766851 |
T |
|
| Q |
219 |
ctttttgaataaattattttgtttaattactctcaaatctaatctaacacatacactttgatctagtattgtacatgatctcctccaatgaggtggatgc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766850 |
ctttttgaataaattattttgtttaattactctcaaatctaatctaacacatacactttgatctagtattgtacatgatctcctccaatgaggtggatgc |
49766751 |
T |
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| Q |
319 |
attattcttttgacgtatcaaaatataaatcaccgctaaaattgatgtttatatttagtgttcattcgtctgttgaatattgttagt |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49766750 |
attattcttttgacgtatcaaaatataaatcaccgctaaaattgatgtttatatttagtgttcattcgtctgttgaatattattagt |
49766664 |
T |
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