View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13296_low_5 (Length: 419)

Name: NF13296_low_5
Description: NF13296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13296_low_5
NF13296_low_5
[»] chr5 (4 HSPs)
chr5 (19-419)||(36847617-36848006)
chr5 (31-357)||(6162044-6162377)
chr5 (49-254)||(36859331-36859530)
chr5 (246-419)||(36858884-36859049)
[»] chr3 (2 HSPs)
chr3 (21-310)||(46522154-46522445)
chr3 (21-311)||(49881719-49881993)
[»] chr6 (3 HSPs)
chr6 (21-311)||(6679713-6680006)
chr6 (24-311)||(6765541-6765830)
chr6 (21-128)||(6774466-6774573)
[»] chr1 (1 HSPs)
chr1 (96-380)||(18135792-18136082)
[»] scaffold0299 (2 HSPs)
scaffold0299 (224-380)||(13650-13806)
scaffold0299 (21-130)||(13481-13584)


Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 419
Target Start/End: Complemental strand, 36848006 - 36847617
Alignment:
Q  19 gggaagcccttcgtaccgtcgtttaccatgagatcctggtatttttcttttaaagtttatttctatgtcaatagaactaataaaatgaacacttaatcct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  36848006 gggaagcccttcgtaccgtcgtttaccatgagatcctggtatttttcttttaaagattatttctatgtcaatagaacta-taaaatgaacacttaatcct 36847908  T
Q  119 tccattctttctatttatgcnnnnnnnnncctatcatcagattggataccttgatttttgcaagaaaaatggtttcttaacttgctacatatggtcctgt 218  Q
    ||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36847907 tccattctttctatttatgctttttttt-cctatcatcagattggataccttgatttttgcaagaaaaatggtttctcaacttgctacatatggtcctgt 36847809  T
Q  219 gctccttcagaaaaaggggatgattatatactatattgccatcccgaagagcaaaaaactccaacgaatgataagctacgccgttggtcagtcnnnnnnn 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||           
T  36847808 gctccttcagaaaaaggggatgattatatactatattgccatcccgaagagcaaaaaactccaaagaatgataagctacgccgttggtcagtcttttttt 36847709  T
Q  319 cttcttatgagtctttgtgtgttgaattttcatgagctaatgtatacattacattgaaaattgaaaatttgagagtacaattttcctttcttttatcatc 418  Q
    ||| |||||||||  |||||||||||||||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||||||    
T  36847708 ctttttatgagtc--tgtgtgttgaattttcatgagctaatgtatacattac-------attgaaaatttgagggtacaattttcctttcttttatcatc 36847618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 31 - 357
Target Start/End: Complemental strand, 6162377 - 6162044
Alignment:
Q  31 gtaccgtcgtttaccatgagatcctggtattttt-cttttaaagtttatttctatgtcaatagaactaataaaatgaacacttaatccttccattctttc 129  Q
    ||||| ||||||||||||||||  |||||||||| |||||||| | |||||||||| ||||| |||||||||||||||||||||||| ||||||||| ||    
T  6162377 gtaccttcgtttaccatgagatattggtattttttcttttaaactctatttctatgccaataaaactaataaaatgaacacttaatctttccattctctc 6162278  T
Q  130 tatttatgcnnnnnnnnncct-----atcatcagattggataccttgatttttgcaagaaaaatggtttcttaacttgctacatatggtcctgtgctcct 224  Q
    |  |||||           ||     |||||||||||||||||||||||||||| || ||||  ||||||| ||||||||||||| || |||||||||||    
T  6162277 ttcttatgattttttctttctttcttatcatcagattggataccttgatttttgtaacaaaaggggtttctcaacttgctacatacgggcctgtgctcct 6162178  T
Q  225 tcagaaaaaggggatgattatatactatattgccatcccgaagagcaaaaaactccaacgaatgataagctacgccgttggtcagtc-nnnnnnncttct 323  Q
    ||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| |||||||||        ||  |    
T  6162177 tcaaagaaaggggatgattatatactatattgccatcccgaagagcaaaagactccgaagaatgataagctgcgccgctggtcagtcttttgtttctctt 6162078  T
Q  324 tatgagtctttgtgtgttgaattttcatgagcta 357  Q
    |||| |||| ||||||||||||||||||||||||    
T  6162077 tatgtgtctgtgtgtgttgaattttcatgagcta 6162044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 49 - 254
Target Start/End: Complemental strand, 36859530 - 36859331
Alignment:
Q  49 agatcctggtatttttcttttaaagtttatttctatgtcaatagaactaataaaatgaacacttaatccttccattctttctatttatgcnnnnnnnnn- 147  Q
    |||| ||||||||||||||||||| |||||||||||||||| ||||||||||||         |||||||||||||||||||||||||||              
T  36859530 agatactggtatttttcttttaaactttatttctatgtcaagagaactaataaa---------taatccttccattctttctatttatgcttcttttttt 36859440  T
Q  148 --cctatcatcagattggataccttgatttttgcaagaaaaatggtttcttaacttgctacatatggtcctgtgctccttcagaaaaaggggatgattat 245  Q
      | ||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||| | |||||||||||| |||||||||||||||||    
T  36859439 ttcttatcatcagattggataccttgatttttgcaagaaaggtggtttctcaacttgctacatatgggcatgtgctccttcaaaaaaaggggatgattat 36859340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 246 - 419
Target Start/End: Complemental strand, 36859049 - 36858884
Alignment:
Q  246 atactatattgccatcccgaagagcaaaaaactccaacgaatgataagctacgccgttggtcagtcnnnnnnncttcttatgagtctttgtgtgttgaat 345  Q
    ||||||||||||||||||||||||||||||||||| | || |||||||||||| ||||||||| ||       ||||||||| |||||||||| ||||||    
T  36859049 atactatattgccatcccgaagagcaaaaaactccgaagagtgataagctacgtcgttggtcaatctttctttcttcttatgtgtctttgtgtattgaat 36858950  T
Q  346 tttcatgagctaatgtatacattacattgaaaattgaaaatttgagagtacaattttcctttcttttatcatct 419  Q
    |||||||||||| ||||||||||||       ||||| ||||||||||||||||||||| ||||||||||||||    
T  36858949 tttcatgagctagtgtatacattac-------attgagaatttgagagtacaattttcc-ttcttttatcatct 36858884  T

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Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 21 - 310
Target Start/End: Original strand, 46522154 - 46522445
Alignment:
Q  21 gaagcccttcgtaccgtcgtttaccatgagatcctggtatttttcttttaaagtttatttctatgtcaatagaactaataaaatgaacacttaatccttc 120  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||||||| |  ||||| ||| |||||||||||||||||||| |||| |||||||     
T  46522154 gaagcccttcgtaccttcgtttaccatgagatattggtatttttcttttaaact--atttcaatgccaatagaactaataaaatgagcactcaatcctta 46522251  T
Q  121 cattctttctatttatgcnnnnnnnnncct----atcatcagattggataccttgatttttgcaagaaaaatggtttcttaacttgctacatatggtcct 216  Q
    |||||||||||||||||          | |    |||||||||||||||||||||||||||| || ||||  |||||| | ||||||||||||||| |||    
T  46522252 cattctttctatttatgttttttttttctttcttatcatcagattggataccttgatttttgtaaaaaaaggggtttcctgacttgctacatatgggcct 46522351  T
Q  217 gtgctccttcagaaaaaggggatgattatatactatattgccatcccgaagagcaaaaaactccaacgaatgataagctacgccgttggtcagt 310  Q
    |||||||||||  |||||||||||||||||||||||||||||| ||| |||||||||| ||||| | |||||||||||||||||| ||||||||    
T  46522352 gtgctccttcaagaaaaggggatgattatatactatattgccaccccaaagagcaaaagactccgaagaatgataagctacgccggtggtcagt 46522445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 21 - 311
Target Start/End: Original strand, 49881719 - 49881993
Alignment:
Q  21 gaagcccttcgtaccgtcgtttaccatgagatcctggtatttttcttttaaagtttatttctatgtcaatagaactaataaaatgaacacttaatccttc 120  Q
    ||||||||||||||| | ||||||||||||||  |||||||||||||||||| | |||||||||| |||||||||||| ||                |||    
T  49881719 gaagcccttcgtacctttgtttaccatgagatattggtatttttcttttaaactctatttctatgccaatagaactaaaaa----------------ttc 49881802  T
Q  121 cattctttctatttatgcnnnnnnnnncctatcatcagattggataccttgatttttgcaagaaaaatggtttcttaacttgctacatatggtcctgtgc 220  Q
    |||||||||||||||||          ||||||||||||||||||||||||||||||| ||||||   ||||||| |||||||||||||||| |||||||    
T  49881803 cattctttctatttatgtttttttcttcctatcatcagattggataccttgatttttgtaagaaacggggtttctcaacttgctacatatgggcctgtgc 49881902  T
Q  221 tccttcagaaaaaggggatgattatatactatattgccatcccgaagagcaaaaaactccaacgaatgataagctacgccgttggtcagtc 311  Q
    |||||||  ||||||||||||||||||||||||||| ||||| ||||||||||| ||||| | ||||||||||||||||||||||||||||    
T  49881903 tccttcaagaaaaggggatgattatatactatattgtcatcctgaagagcaaaagactccgaagaatgataagctacgccgttggtcagtc 49881993  T

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Target: chr6 (Bit Score: 116; Significance: 7e-59; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 21 - 311
Target Start/End: Original strand, 6679713 - 6680006
Alignment:
Q  21 gaagcccttcgtaccgtcgtttaccatgagatcctggtatttttcttttaaagtttatttctatgtcaatagaactaataaaatgaacacttaatccttc 120  Q
    |||||||| |||||| ||||||||||||||||  |||||||||||||||||| | |||||||||| |||||||||||||||||||||||||| |||||||    
T  6679713 gaagccctacgtaccttcgtttaccatgagatattggtatttttcttttaaactctatttctatgccaatagaactaataaaatgaacactttatccttc 6679812  T
Q  121 cattctttct----atttatgcnnnnnnnnn--cctatcatcagattggataccttgatttttgcaagaaaaatggtttcttaacttgctacatatggtc 214  Q
    ||||||||||    |||| | |           | ||||||||||||||||| ||||||||||| ||| |||  ||||||| |||||||||||||||| |    
T  6679813 cattctttctgcttattttttctttctttctttcttatcatcagattggatatcttgatttttgtaaggaaaggggtttctcaacttgctacatatgggc 6679912  T
Q  215 ctgtgctccttcagaaaaaggggatgattatatactatattgccatcccgaagagcaaaaaactccaacgaatgataagctacgccgttggtcagtc 311  Q
    |||| ||||   | ||||||| |||||||||||| |||||||||||||| |||||||||| ||||| | |||||||||||||||||  |||||||||    
T  6679913 ctgtcctcc---aaaaaaaggtgatgattatatattatattgccatcccaaagagcaaaagactccgaagaatgataagctacgccactggtcagtc 6680006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 24 - 311
Target Start/End: Complemental strand, 6765830 - 6765541
Alignment:
Q  24 gcccttcgtaccgtcgtttaccatgagatcctggtatttttcttttaaagtttatttctatgtcaatagaactaataaaatgaacacttaatccttccat 123  Q
    |||||||||||||||||||||||||||||  |||||||||||||| ||| | ||||| |||| ||||||||||||||||||||||||||||||||||| |    
T  6765830 gcccttcgtaccgtcgtttaccatgagatattggtatttttctttcaaactctatttttatgccaatagaactaataaaatgaacacttaatccttcctt 6765731  T
Q  124 tctttctatttatgcnnnnnnnnncct-----atcatcagattggataccttgatttttgcaagaaaaatggtttcttaacttgctacatatggtcctgt 218  Q
    | ||| |  ||||||         | |     |||||||||||||||| ||||||||||| ||| |||  ||||||| |||||||||||||||| |||||    
T  6765730 tttttttgcttatgctttttttttcttcttatatcatcagattggatatcttgatttttgtaaggaaaggggtttctcaacttgctacatatgggcctgt 6765631  T
Q  219 gctccttcagaaaaaggggatgattatatactatattgccatcccgaagagcaaaaaactccaacgaatgataagctacgccgttggtcagtc 311  Q
    |||||   | ||||||| |||||||||||| ||||||| |||| |||||||||||| ||||| | ||||||||| |||||||| |||||||||    
T  6765630 gctcc---aaaaaaaggtgatgattatatattatattgtcatctcgaagagcaaaagactccgaagaatgataaactacgccgatggtcagtc 6765541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 6774573 - 6774466
Alignment:
Q  21 gaagcccttcgtaccgtcgtttaccatgagatcctggtatttttcttttaaagtttatttctatgtcaatagaactaataaaatgaacacttaatccttc 120  Q
    |||||||| |||||| ||||||||||||||||  |||||||||||||||||| | |||||||||| ||||||||||||||||| ||||||||||||||||    
T  6774573 gaagccctacgtaccttcgtttaccatgagatattggtatttttcttttaaactctatttctatgccaatagaactaataaaacgaacacttaatccttc 6774474  T
Q  121 cattcttt 128  Q
    ||||||||    
T  6774473 cattcttt 6774466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 96 - 380
Target Start/End: Original strand, 18135792 - 18136082
Alignment:
Q  96 taataaaatgaacacttaatccttccattctttctatttatgcnnnnnnnnn-------cctatcatcagattggataccttgatttttgcaagaaaaat 188  Q
    |||||||||||||||||||||||||||||||||||||||||||                ||| ||||||||||||||||||||||||||  |||||||      
T  18135792 taataaaatgaacacttaatccttccattctttctatttatgcttttttttttttttttcctgtcatcagattggataccttgatttttataagaaaagg 18135891  T
Q  189 ggtttcttaacttgctacatatggtcctgtgctccttcagaaaaagggg-atgattatatactatattgccatcccgaagagcaaaaaactccaacgaat 287  Q
    ||||||| |||||||||||| ||| | | | |||||||| ||||| | | ||||||||||||||||||||||| | || |||||| |  |||| | ||||    
T  18135892 ggtttctcaacttgctacatgtgggcattttctccttcaaaaaaaagagcatgattatatactatattgccattctgatgagcaaga--ctccgaagaat 18135989  T
Q  288 gataagctacgccgttggtcagtcnnnnnnncttcttatgagtctttgtgtgttgaattttcatgagctaatgtatacattacattgaaaatt 380  Q
    | ||||||  |||| |||||||||       || ||||||  ||| |||||||||||||||||||||||| ||||||||||||||||| ||||    
T  18135990 ggtaagctctgccgctggtcagtctttcgttctccttatgtatctgtgtgtgttgaattttcatgagctagtgtatacattacattgagaatt 18136082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 224 - 380
Target Start/End: Original strand, 13650 - 13806
Alignment:
Q  224 ttcagaaaaaggggatgattatatactatattgccatcccgaagagcaaaaaactccaacgaatgataagctacgccgttggtcagtcnnnnnnncttct 323  Q
    |||| ||||||| | |||||||||| |||||||||||||||||| |||||| ||||| | |||||||||||||||||| |||||||||       || ||    
T  13650 ttcaaaaaaaggtggtgattatatattatattgccatcccgaagtgcaaaagactccgaagaatgataagctacgccgctggtcagtcttactttctcct 13749  T
Q  324 tatgagtctttgtgtgttgaattttcatgagctaatgtatacattacattgaaaatt 380  Q
    |||  |||  ||||| |||||| ||||||||||| |||||||| |||||||| ||||    
T  13750 tatatgtccgtgtgtattgaatattcatgagctagtgtatacaatacattgagaatt 13806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 13481 - 13584
Alignment:
Q  21 gaagcccttcgtaccgtcgtttaccatgagatcctggtatttttcttttaaagtttatttctatgtcaatagaactaataaaatgaacacttaatccttc 120  Q
    |||||||||| |||||||||||||||||||||  |||||||||      ||| | ||||||||||  |||||||||||||||||||||||||||||||||    
T  13481 gaagcccttcttaccgtcgtttaccatgagatattggtatttt------aaactctatttctatgcaaatagaactaataaaatgaacacttaatccttc 13574  T
Q  121 cattctttct 130  Q
    ||||||||||    
T  13575 cattctttct 13584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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