View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13296_low_7 (Length: 393)
Name: NF13296_low_7
Description: NF13296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13296_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 15 - 386
Target Start/End: Complemental strand, 34788200 - 34787829
Alignment:
| Q |
15 |
tcatcatccgctagctccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaactttgcataacgaatccaagcaccaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788200 |
tcatcatccgctagctccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaactttgcataacgaatccaagcaccaa |
34788101 |
T |
|
| Q |
115 |
ccctaggatgacacaaaacaaatctctcgaaaatccctctcgcacgttcaatctcattatatctaagctcaaattttatataagataaccatccttgctg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788100 |
ccctaggatgacacaaaacaaatctctcgaaaatccctctcgcacgttcaatctcattatatctaagctcaaattttatataagataaccatccttgctg |
34788001 |
T |
|
| Q |
215 |
atccggcatccacttcatccatctctcgaaaaccagcctcgcccccgcaacattgccaagcatctcctccatatgaatatacttataccacaactgatca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788000 |
atccggcatccacttcatccatctctcgaaaaccagcctcgcccccgcaacattgccaagcatctcctccatatgaatatacttataccacaactgatca |
34787901 |
T |
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| Q |
315 |
acccgcggcaaaagagtaaccgcgcgttcccaaacattccgagcatgattaataaacttattcttcatctca |
386 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34787900 |
acccgcggcaaaagagtaaccgcgcgatcccaaacattccgagcatgattaataaacttattcttcatctca |
34787829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 29 - 386
Target Start/End: Original strand, 2293011 - 2293368
Alignment:
| Q |
29 |
ctccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaactttgcataacgaatccaagcaccaaccctaggatgacac |
128 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
2293011 |
ctccaccgctctttcataaacattcctcgccttaggaacctcgccattcttcatctcaaacttcgcataacgtatccaagcaccaaccctaggatgacac |
2293110 |
T |
|
| Q |
129 |
aaaacaaatctctcgaaaatccctctcgcacgttcaatctcattatatctaagctcaaattttatataagataaccatccttgctgatccggcatccact |
228 |
Q |
| |
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|| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
2293111 |
aatacaaatctctcgaaaatccctctagctcgttcaatctcattatatctcagctcaaattttatataagatagccatccttgctgatccggcatccatt |
2293210 |
T |
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| Q |
229 |
tcatccatctctcgaaaaccagcctcgcccccgcaacattgccaagcatctcctccatatgaatatacttataccacaactgatcaacccgcggcaaaag |
328 |
Q |
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||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| |
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| T |
2293211 |
tcatccatctctcaaaaacctgtctcgcccccgcaacattgccaagcatctcctccatatgaatatacttataccacaactgatccactcgtggcaaaag |
2293310 |
T |
|
| Q |
329 |
agtaaccgcgcgttcccaaacattccgagcatgattaataaacttattcttcatctca |
386 |
Q |
| |
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|||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
2293311 |
agtaacagcgcgatcccaaacattcctcgcatggttaataaacttattcttcatctca |
2293368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 29 - 386
Target Start/End: Original strand, 33635664 - 33636021
Alignment:
| Q |
29 |
ctccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaactttgcataacgaatccaagcaccaaccctaggatgacac |
128 |
Q |
| |
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|||||| ||||||||||||||| | || ||| ||||||| || ||||||||||||||||| || |||||||| | |||||||||||| ||||||||||| |
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| T |
33635664 |
ctccacagctctttcataaacacttcttgccctaggaacttcaccattcttcatctcaaatttcgcataacgtaaccaagcaccaacactaggatgacat |
33635763 |
T |
|
| Q |
129 |
aaaacaaatctctcgaaaatccctctcgcacgttcaatctcattatatctaagctcaaattttatataagataaccatccttgctgatccggcatccact |
228 |
Q |
| |
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|||||| ||||||||| ||||| ||||| || ||||| || | || ||| ||||||| ||||| | |||| | |||||||| |||||||| | |
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| T |
33635764 |
gtaacaaaaagctcgaaaattcctctaagtcgttcgatttcattgtactttagttcatattttatgtaagagagccatgcatgctgatcaggcatccatt |
33635863 |
T |
|
| Q |
229 |
tcatccatctctcgaaaaccagcctcgcccccgcaacattgccaagcatctcctccatatgaatatacttataccacaactgatcaacccgcggcaaaag |
328 |
Q |
| |
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|||||| |||||||||||| || | || || ||||||||||| |||| ||||||||| || |||| ||||||||| |||| |||||||| ||||| |
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| T |
33635864 |
ccatccacctctcgaaaacctctctaactccggcgacattgccaagaatcttctccatatgtatgtactcataccacaattgatggacccgcggtaaaag |
33635963 |
T |
|
| Q |
329 |
agtaaccgcgcgttcccaaacattccgagcatgattaataaacttattcttcatctca |
386 |
Q |
| |
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| |||| ||||| || ||||||||| |||||||| | || |||||||||||||| |
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| T |
33635964 |
aataacagcgcgatcgtaaacattccttgcatgattgacgaatctattcttcatctca |
33636021 |
T |
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