View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13298_high_11 (Length: 218)
Name: NF13298_high_11
Description: NF13298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13298_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 1300454 - 1300637
Alignment:
| Q |
19 |
ccttgagatgatcctcaacaacatctattttctgctgtttgttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1300454 |
ccttgagatgatcctcaacaacatctattttctgctgtttgttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccct |
1300553 |
T |
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| Q |
119 |
ttctttacgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattcat |
202 |
Q |
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| T |
1300554 |
ttctttacgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaatcattcat |
1300637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 8658362 - 8658542
Alignment:
| Q |
19 |
ccttgagatgatcctcaacaacatctattttctgctgtttgttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccct |
118 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |||||| | |||| |||||||||||||||||||||| |
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| T |
8658362 |
ccttcagatgatcctcaacaacatctattttctgctgtttgtt---attctcatgaagcaagtttgttgccaaggtagttgcattgttgatcttttccct |
8658458 |
T |
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| Q |
119 |
ttctttacgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattcat |
202 |
Q |
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| T |
8658459 |
ttctccacgggagaggtttaaattaacatccttcttttttaacgcattcttcactttgtaaacacaataatccaaatcattcat |
8658542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 8666489 - 8666586
Alignment:
| Q |
93 |
gtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatc |
190 |
Q |
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| T |
8666489 |
gtaattgcattgttgatctttgcaatttcttgaggggagagaatcagattaacatccttcttctttaaagccttcttcatattgtaaacacaagaatc |
8666586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 3146372 - 3146446
Alignment:
| Q |
128 |
ggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattcat |
202 |
Q |
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| T |
3146372 |
ggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcat |
3146446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 8672167 - 8672070
Alignment:
| Q |
93 |
gtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatc |
190 |
Q |
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| T |
8672167 |
gtaattgcattgttgatctttgcaatttcttgaggggagagaatcagattaacattgttcttctctaaagcgttcttcatattgtaaacacaagaatc |
8672070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 8645950 - 8646016
Alignment:
| Q |
93 |
gtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttcttta |
159 |
Q |
| |
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| T |
8645950 |
gtaattgcattattgatcttgtcattttctttagatgagagatttaatttaacatccttcctcttta |
8646016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 8653261 - 8653318
Alignment:
| Q |
95 |
aattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttc |
152 |
Q |
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| T |
8653261 |
aattgcattgttgatcttttcactttcttgaggggagatgattagattaacatccttc |
8653318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 4679720 - 4679540
Alignment:
| Q |
19 |
ccttgagatgatcctcaacaacatctattttctgctgtttgttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccct |
118 |
Q |
| |
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|||| ||||||||||||| ||||||||||| | |||| | ||||||||||||||||||| | || | || |||||||||| |||||||||||| || |
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| T |
4679720 |
ccttcagatgatcctcaagaacatctatttctttctgt---tcgttattcttatcaagcaagttggtggccactgtaattgcatcgttgatcttttcact |
4679624 |
T |
|
| Q |
119 |
ttctttacgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattcat |
202 |
Q |
| |
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||| | || ||||| |||||||||||||||||||||||||| |||||||| | |||||||||||| | ||||| ||| |||| |
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| T |
4679623 |
ttcatcacaagagagctttaaattaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcat |
4679540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 60 - 190
Target Start/End: Original strand, 29464888 - 29465019
Alignment:
| Q |
60 |
ttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttctttacggga-gagatttaaattaacatccttcttcttt |
158 |
Q |
| |
|
|||||||||||||||||||| | | ||| |||||||||||||||||||| || ||||||| | |||| ||| | ||||||||| ||||||||||| |
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| T |
29464888 |
ttgttattcttatcaagcaaattcacagagacagtaattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttcttt |
29464987 |
T |
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| Q |
159 |
aaggcattcttcactttgtaaacacaataatc |
190 |
Q |
| |
|
|| | |||||||| |||||||||||| |||| |
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| T |
29464988 |
aatgtattcttcatattgtaaacacaagaatc |
29465019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 60 - 202
Target Start/End: Complemental strand, 16658648 - 16658509
Alignment:
| Q |
60 |
ttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttcttta |
159 |
Q |
| |
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|||||||||||||||||||| ||||| | || |||||||||||||||||||| || |||||| | |||||| |||||||| ||||| ||||||| |
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| T |
16658648 |
ttgttattcttatcaagcaaacttgtggccacagtaattgcattgttgatcttctcaatttcttgagaggagagctttaaattcacatc---tttcttta |
16658552 |
T |
|
| Q |
160 |
aggcattcttcactttgtaaacacaataatccaaagcattcat |
202 |
Q |
| |
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| |||||||||| |||||||||||||||||||| |||||||| |
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| T |
16658551 |
aagcattcttcatattgtaaacacaataatccaatgcattcat |
16658509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 190
Target Start/End: Complemental strand, 9337022 - 9336892
Alignment:
| Q |
60 |
ttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttcttta |
159 |
Q |
| |
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|||||||||||||||||||| | | | || |||||||||||||||||||| || |||||| | | | |||| | | |||||||| |||||||||| |
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| T |
9337022 |
ttgttattcttatcaagcaaattcatagcaacagtaattgcattgttgatcttctcaatttcttgaggcgtgagaatcagattaacattgttcttcttta |
9336923 |
T |
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| Q |
160 |
aggcattcttcactttgtaaacacaataatc |
190 |
Q |
| |
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| || ||||||| |||||||||||| |||| |
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| T |
9336922 |
aagcgttcttcatattgtaaacacaagaatc |
9336892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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