View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13298_high_3 (Length: 439)

Name: NF13298_high_3
Description: NF13298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13298_high_3
NF13298_high_3
[»] chr8 (4 HSPs)
chr8 (9-336)||(32144424-32144751)
chr8 (274-347)||(6501486-6501559)
chr8 (313-346)||(12530658-12530691)
chr8 (284-332)||(29096952-29097000)
[»] chr1 (7 HSPs)
chr1 (315-439)||(50410262-50410386)
chr1 (276-333)||(31667430-31667487)
chr1 (294-348)||(16808965-16809019)
chr1 (274-346)||(19637760-19637832)
chr1 (284-351)||(26462650-26462717)
chr1 (274-303)||(50195460-50195489)
chr1 (279-327)||(264615-264663)
[»] chr3 (6 HSPs)
chr3 (9-217)||(28886997-28887200)
chr3 (275-353)||(42748382-42748460)
chr3 (279-340)||(8091412-8091473)
chr3 (233-330)||(21135654-21135751)
chr3 (291-351)||(26643290-26643350)
chr3 (274-339)||(1502573-1502638)
[»] chr7 (2 HSPs)
chr7 (289-351)||(18750863-18750925)
chr7 (283-327)||(43160495-43160539)
[»] chr6 (3 HSPs)
chr6 (284-337)||(27661737-27661790)
chr6 (279-351)||(2468472-2468545)
chr6 (285-337)||(29449682-29449734)
[»] chr4 (3 HSPs)
chr4 (270-306)||(47665849-47665885)
chr4 (279-351)||(27131672-27131745)
chr4 (283-351)||(26504303-26504371)
[»] chr2 (6 HSPs)
chr2 (279-351)||(35198231-35198303)
chr2 (271-358)||(37491847-37491934)
chr2 (281-352)||(39459770-39459841)
chr2 (281-339)||(18622414-18622472)
chr2 (273-353)||(896196-896276)
chr2 (279-351)||(29970549-29970621)
[»] chr5 (4 HSPs)
chr5 (287-338)||(29365006-29365057)
chr5 (273-306)||(10948652-10948685)
chr5 (275-328)||(32932228-32932281)
chr5 (287-331)||(30267531-30267575)
[»] scaffold0011 (1 HSPs)
scaffold0011 (280-330)||(240022-240072)


Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 9 - 336
Target Start/End: Original strand, 32144424 - 32144751
Alignment:
Q  9 gaagaatattgtaagaagtcaagtaaggatttatagaaaaggaaatttgagtttttcagattttgggtgaattacaatgttttatttgatttgttctgaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32144424 gaagaatattgtaagaagtcaagtaaggatttatagaaaaggaaatttgagtttttcagattttgggtgaattacaatgttttatttgatttgttctgaa 32144523  T
Q  109 ctgaagaagaatattgaaaaatgataggagcaatttcttttgtagataattttcaggaaaaatcaagtattggattatgtcaaataaataaatattgtca 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32144524 ctgaagaagaatattgaaaaatgataggagcaatttcttttgtagataattttcaggaaaaatcaagtattggattatgtcatataaataaatattgtca 32144623  T
Q  209 atgggagttgatcgtaacaattattaactatgttgtaccgacactacaaattaaaagtgcatccggtgtccgacaccgacacatgtgattacatttaact 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32144624 atgggagttgatcgtaacaattattaactatgttgtaccgacactacaaattaaaagtgcatccggtgtccgacaccgacacatgtgattacatttaact 32144723  T
Q  309 atactattttcttaaattattaccaatg 336  Q
    ||||||||||||||||||||||||||||    
T  32144724 atactattttcttaaattattaccaatg 32144751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 6501559 - 6501486
Alignment:
Q  274 gtgtccgacaccgacacatgtgattacatttaactatactattttcttaaattattaccaatgtcgatgtgtca 347  Q
    ||||| |||||||||||||||| |||||||||| |||   ||| ||| |||||||||||| |||| | ||||||    
T  6501559 gtgtctgacaccgacacatgtggttacatttaattatttcattctctcaaattattaccagtgtcaacgtgtca 6501486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 346
Target Start/End: Original strand, 12530658 - 12530691
Alignment:
Q  313 tattttcttaaattattaccaatgtcgatgtgtc 346  Q
    |||||||||||||||||| |||||||||||||||    
T  12530658 tattttcttaaattattatcaatgtcgatgtgtc 12530691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 29097000 - 29096952
Alignment:
Q  284 ccgacacatgtgattacatttaactatactattttcttaaattattacc 332  Q
    |||||||||||||||||||| || ||   ||||||||||||||||||||    
T  29097000 ccgacacatgtgattacattcaattaatttattttcttaaattattacc 29096952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 315 - 439
Target Start/End: Complemental strand, 50410386 - 50410262
Alignment:
Q  315 ttttcttaaattattaccaatgtcgatgtgtcagtgtgtccgtgactgtgtatgtgcttcatggtatagaagccccnnnnnnnttataactgcactgcta 414  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||| |||| |||||    
T  50410386 ttttcttaaattattaccagtgtcaatgtgtcagtgtgtccgtgactgtgtatgtgcttcatggtatagaagccccaaaaaaattataaatgcaatgcta 50410287  T
Q  415 gaaactatggttaacaaaatgacaa 439  Q
    |||||||||||||||||||||||||    
T  50410286 gaaactatggttaacaaaatgacaa 50410262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 31667487 - 31667430
Alignment:
Q  276 gtccgacaccgacacatgtgattacatttaactatactattttcttaaattattacca 333  Q
    ||||||||||||||||||||||||||||||| |||   ||||||| ||||||||||||    
T  31667487 gtccgacaccgacacatgtgattacatttaattatgtcattttctaaaattattacca 31667430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 16808965 - 16809019
Alignment:
Q  294 tgattacatttaactatactattttcttaaattattaccaatgtcgatgtgtcag 348  Q
    |||||| |||||| ||| |||||||||||||||||||||  ||||||||||||||    
T  16808965 tgattatatttaattattctattttcttaaattattaccggtgtcgatgtgtcag 16809019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 346
Target Start/End: Complemental strand, 19637832 - 19637760
Alignment:
Q  274 gtgtccgacaccgacacatgtgattacatttaactatactattttcttaaattattaccaatgtcgatgtgtc 346  Q
    ||||||||||||||||||| |||||||||| ||  ||   ||||||||||||||||| |  ||||||||||||    
T  19637832 gtgtccgacaccgacacatatgattacattgaataatgtcattttcttaaattattatcggtgtcgatgtgtc 19637760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 26462650 - 26462717
Alignment:
Q  284 ccgacacatgtgattacatttaactatactattttcttaaattattaccaatgtcgatgtgtcagtgt 351  Q
    |||||||||||||||||||| || |||   ||||||||||||||||| || |||||| ||||| ||||    
T  26462650 ccgacacatgtgattacattcaattatttcattttcttaaattattatcagtgtcgacgtgtcggtgt 26462717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 303
Target Start/End: Original strand, 50195460 - 50195489
Alignment:
Q  274 gtgtccgacaccgacacatgtgattacatt 303  Q
    ||||||||||||||||||||||||||||||    
T  50195460 gtgtccgacaccgacacatgtgattacatt 50195489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 264663 - 264615
Alignment:
Q  279 cgacaccgacacatgtgattacatttaactatactattttcttaaatta 327  Q
    ||||||| |||||||||||||||||||| |||  || ||||||||||||    
T  264663 cgacaccaacacatgtgattacatttaagtatgttactttcttaaatta 264615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 28887200 - 28886997
Alignment:
Q  9 gaagaatattgtaagaagtcaagtaaggattt-atagaaaaggaaatttgagtttttcagattttgggtgaattacaatgttttatttgatttgttctga 107  Q
    ||||||| |||||||||||||  | ||||||| | ||||||||||| |||||||||||||||| | || ||| || ||| |||| ||| ||   || |||    
T  28887200 gaagaatcttgtaagaagtcagctcaggattttaaagaaaaggaaaattgagtttttcagattgtaggggaactataatttttttttt-atgcattttga 28887102  T
Q  108 actgaagaagaatattgaaaaatgataggagcaatttcttttgtagataattttcaggaaaaatcaagtattggattatgtcaaataaataaatattgtc 207  Q
    || || |||   |||| |||||| | | || |||||| ||||||||| | |||||||||||| ||||||| |||||||||| | ||||||||||| ||||    
T  28887101 accgacgaa---tatttaaaaataaaatgaacaatttattttgtagaga-ttttcaggaaaa-tcaagtaatggattatgttagataaataaataatgtc 28887007  T
Q  208 aatgggagtt 217  Q
     | |||||||    
T  28887006 caagggagtt 28886997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 353
Target Start/End: Complemental strand, 42748460 - 42748382
Alignment:
Q  275 tgtccgacaccgacacatgtgattacatttaactatactattttcttaaattattaccaatgtcgatgtgtcagtgtgt 353  Q
    |||| |||||| ||||||||||||| ||| |||||| || |||||| | |||||||| | ||||||||||| |||||||    
T  42748460 tgtctgacaccaacacatgtgattaaattcaactattctgttttctcagattattactagtgtcgatgtgtaagtgtgt 42748382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 8091412 - 8091473
Alignment:
Q  279 cgacaccgacacatgtgattacatttaactatactattttcttaaattattaccaatgtcga 340  Q
    ||||| |||||||||| |||||||| ||  || |||||||||||||||||||||| ||||||    
T  8091412 cgacatcgacacatgtaattacattcaataatcctattttcttaaattattaccagtgtcga 8091473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 330
Target Start/End: Complemental strand, 21135751 - 21135654
Alignment:
Q  233 taactatgttgtaccgacactacaaattaaaagtgcatccggtgtccgacaccgacacatgtgattacatttaactatactattttcttaaattatta 330  Q
    ||||||||||| ||||||||| || |||||  |||  ||||||||| |||||||||||||||| || | || || ||| | ||| |||||||||||||    
T  21135751 taactatgttgcaccgacacttcacattaatggtgtgtccggtgtctgacaccgacacatgtggttgctttcaattattccattatcttaaattatta 21135654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 351
Target Start/End: Original strand, 26643290 - 26643350
Alignment:
Q  291 atgtgattacatttaactatactattttcttaaattattaccaatgtcgatgtgtcagtgt 351  Q
    ||||| ||||||| || ||| |||||||||||||||||||||| | |||| ||||||||||    
T  26643290 atgtggttacattcaattattctattttcttaaattattaccagtatcgacgtgtcagtgt 26643350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 1502638 - 1502573
Alignment:
Q  274 gtgtccgacaccgacacatgtgattacatttaactatactattttcttaaattattaccaatgtcg 339  Q
    |||||| |||| |||||||||||||||||| || |||   ||||||||| |||||||||| |||||    
T  1502638 gtgtccaacacagacacatgtgattacattcaattatgtcattttcttagattattaccagtgtcg 1502573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 351
Target Start/End: Complemental strand, 18750925 - 18750863
Alignment:
Q  289 acatgtgattacatttaactatactattttcttaaattattaccaatgtcgatgtgtcagtgt 351  Q
    ||||||||||||||| || |||   |||||||||||||||||||  |||||||||||||||||    
T  18750925 acatgtgattacattcaattatgtcattttcttaaattattaccgttgtcgatgtgtcagtgt 18750863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 43160539 - 43160495
Alignment:
Q  283 accgacacatgtgattacatttaactatactattttcttaaatta 327  Q
    ||||||||||||||||||||| || |||  |||||||||||||||    
T  43160539 accgacacatgtgattacattcaattatgttattttcttaaatta 43160495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 27661790 - 27661737
Alignment:
Q  284 ccgacacatgtgattacatttaactatactattttcttaaattattaccaatgt 337  Q
    |||||||||||||||||||| || |||| ||||||||||||||| || ||||||    
T  27661790 ccgacacatgtgattacattgaaatatattattttcttaaattactatcaatgt 27661737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 351
Target Start/End: Original strand, 2468472 - 2468545
Alignment:
Q  279 cgacaccgacacatgtgattacatttaacta-tactattttcttaaattattaccaatgtcgatgtgtcagtgt 351  Q
    ||||||| ||||||||| ||||||| || || | | ||||||||||||||||||||||||| | ||| ||||||    
T  2468472 cgacaccaacacatgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagtgt 2468545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 337
Target Start/End: Complemental strand, 29449734 - 29449682
Alignment:
Q  285 cgacacatgtgattacatttaactatactattttcttaaattattaccaatgt 337  Q
    ||||||||||||||||||| || |||  |||||||| |||||| |||||||||    
T  29449734 cgacacatgtgattacattcaattatgttattttctgaaattactaccaatgt 29449682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 306
Target Start/End: Original strand, 47665849 - 47665885
Alignment:
Q  270 tccggtgtccgacaccgacacatgtgattacatttaa 306  Q
    |||||||||| ||||||||||||||||||||||||||    
T  47665849 tccggtgtccaacaccgacacatgtgattacatttaa 47665885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 351
Target Start/End: Original strand, 27131672 - 27131745
Alignment:
Q  279 cgacaccgacacatgtgattacatttaacta-tactattttcttaaattattaccaatgtcgatgtgtcagtgt 351  Q
    ||||||| ||||||||| ||||||| || || | | ||||||||||||||||||||||||| | ||| ||||||    
T  27131672 cgacaccaacacatgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtgccagtgt 27131745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 351
Target Start/End: Original strand, 26504303 - 26504371
Alignment:
Q  283 accgacacatgtgattacatttaactatactattttcttaaattattaccaatgtcgatgtgtcagtgt 351  Q
    |||||||||| | |||||| | ||||||   ||||||||||||||||| || ||||||||| |||||||    
T  26504303 accgacacatataattacactgaactatttgattttcttaaattattagcagtgtcgatgtttcagtgt 26504371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 351
Target Start/End: Original strand, 35198231 - 35198303
Alignment:
Q  279 cgacaccgacacatgtgattacatttaactatactattttcttaaattattaccaatgtcgatgtgtcagtgt 351  Q
    |||||||| |||||||||||||||| || ||    ||||||||||||||| |||||| ||||||||| |||||    
T  35198231 cgacaccgtcacatgtgattacattcaattaattcattttcttaaattatgaccaatatcgatgtgttagtgt 35198303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 358
Target Start/End: Original strand, 37491847 - 37491934
Alignment:
Q  271 ccggtgtccgacaccgacacatgtgattacatttaactatactattttcttaaattattaccaatgtcgatgtgtcagtgtgtccgtg 358  Q
    |||||||| ||||||||||||| | |||||||| || ||   |||||||| ||| | ||| || | ||||||||||||||||||||||    
T  37491847 ccggtgtctgacaccgacacatttaattacattgaattaagttattttctcaaaattttatcagtatcgatgtgtcagtgtgtccgtg 37491934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 352
Target Start/End: Complemental strand, 39459841 - 39459770
Alignment:
Q  281 acaccgacacatgtgattacatttaactatactattttcttaaattattaccaatgtcgatgtgtcagtgtg 352  Q
    |||||||||| |||||||||||| || ||    |||| |||||||||||||||||||||| |||| ||||||    
T  39459841 acaccgacacgtgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgtg 39459770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 18622472 - 18622414
Alignment:
Q  281 acaccgacacatgtgattacatttaactatactattttcttaaattattaccaatgtcg 339  Q
    |||||||||||||||||| ||||||| |||   ||||||||||||||||| | ||||||    
T  18622472 acaccgacacatgtgattgcatttaattatgtcattttcttaaattattatcgatgtcg 18622414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 353
Target Start/End: Complemental strand, 896276 - 896196
Alignment:
Q  273 ggtgtccgacaccgacacatgtgattacatttaactatactattttcttaaattattaccaatgtcgatgtgtcagtgtgt 353  Q
    |||||||||| ||||||||| |||||||||| || |||   ||||||| ||| ||||| || |||||  ||||||||||||    
T  896276 ggtgtccgacgccgacacatatgattacattgaaatatgtgattttctcaaactattagcagtgtcggcgtgtcagtgtgt 896196  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 351
Target Start/End: Original strand, 29970549 - 29970621
Alignment:
Q  279 cgacaccgacacatgtgattacatttaactatactattttcttaaattattaccaatgtcgatgtgtcagtgt 351  Q
    ||||| |||||||| |||||||| | |||||| | ||||||| ||||||||| |  |||| ||||||||||||    
T  29970549 cgacatcgacacatatgattacactgaactatgcgattttctcaaattattagcggtgtcaatgtgtcagtgt 29970621  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 338
Target Start/End: Complemental strand, 29365057 - 29365006
Alignment:
Q  287 acacatgtgattacatttaactatactattttcttaaattattaccaatgtc 338  Q
    |||| ||||||||||||||| ||||| |||||||||||||||| ||| ||||    
T  29365057 acacctgtgattacatttaattataccattttcttaaattattgccattgtc 29365006  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 306
Target Start/End: Original strand, 10948652 - 10948685
Alignment:
Q  273 ggtgtccgacaccgacacatgtgattacatttaa 306  Q
    ||||||| ||||||||||||||||||||||||||    
T  10948652 ggtgtccaacaccgacacatgtgattacatttaa 10948685  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 32932228 - 32932281
Alignment:
Q  275 tgtccgacaccgacacatgtgattacatttaactatactattttcttaaattat 328  Q
    ||||| |||||||||||||||||||||||  | |||| |||||||| |||||||    
T  32932228 tgtccaacaccgacacatgtgattacattggattatattattttctaaaattat 32932281  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 30267531 - 30267575
Alignment:
Q  287 acacatgtgattacatttaactatactattttcttaaattattac 331  Q
    |||| ||||||||||||||| |||| |||||||| ||||||||||    
T  30267531 acacttgtgattacatttaattatattattttctcaaattattac 30267575  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 240022 - 240072
Alignment:
Q  280 gacaccgacacatgtgattacatttaactatactattttcttaaattatta 330  Q
    ||||||||||||| |||||||||| || |||| |||||||| |||||||||    
T  240022 gacaccgacacatatgattacattgaattatattattttctcaaattatta 240072  T

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